Baris Kanber

2papers

2 Papers

IVAug 20, 2020
Image quality assessment for closed-loop computer-assisted lung ultrasound

Zachary M C Baum, Ester Bonmati, Lorenzo Cristoni et al.

We describe a novel, two-stage computer assistance system for lung anomaly detection using ultrasound imaging in the intensive care setting to improve operator performance and patient stratification during coronavirus pandemics. The proposed system consists of two deep-learning-based models: a quality assessment module that automates predictions of image quality, and a diagnosis assistance module that determines the likelihood-oh-anomaly in ultrasound images of sufficient quality. Our two-stage strategy uses a novelty detection algorithm to address the lack of control cases available for training the quality assessment classifier. The diagnosis assistance module can then be trained with data that are deemed of sufficient quality, guaranteed by the closed-loop feedback mechanism from the quality assessment module. Using more than 25000 ultrasound images from 37 COVID-19-positive patients scanned at two hospitals, plus 12 control cases, this study demonstrates the feasibility of using the proposed machine learning approach. We report an accuracy of 86% when classifying between sufficient and insufficient quality images by the quality assessment module. For data of sufficient quality - as determined by the quality assessment module - the mean classification accuracy, sensitivity, and specificity in detecting COVID-19-positive cases were 0.95, 0.91, and 0.97, respectively, across five holdout test data sets unseen during the training of any networks within the proposed system. Overall, the integration of the two modules yields accurate, fast, and practical acquisition guidance and diagnostic assistance for patients with suspected respiratory conditions at point-of-care.

IVMay 7, 2020
Sparse data to structured imageset transformation

Baris Kanber

Machine learning problems involving sparse datasets may benefit from the use of convolutional neural networks if the numbers of samples and features are very large. Such datasets are increasingly more frequently encountered in a variety of different domains. We convert such datasets to imagesets while attempting to give each image structure that is amenable for use with convolutional neural networks. Experimental results on two publicly available, sparse datasets show that the approach can boost classification performance compared to other methods, which may be attributed to the formation of visually distinguishable shapes on the resultant images.