Qing Wu

Qing Wu, Chenhe Du, Xuanyu Tian et al.

Motion correction (MoCo) in radial MRI is a particularly challenging problem due to the unpredictability of subject movement. Current state-of-the-art (SOTA) MoCo algorithms often rely on extensive high-quality MR images to pre-train neural networks, which constrains the solution space and leads to outstanding image reconstruction results. However, the need for large-scale datasets significantly increases costs and limits model generalization. In this work, we propose Moner, an unsupervised MoCo method that jointly reconstructs artifact-free MR images and estimates accurate motion from undersampled, rigid motion-corrupted k-space data, without requiring any training data. Our core idea is to leverage the continuous prior of implicit neural representation (INR) to constrain this ill-posed inverse problem, facilitating optimal solutions. Specifically, we integrate a quasi-static motion model into the INR, granting its ability to correct subject's motion. To stabilize model optimization, we reformulate radial MRI reconstruction as a back-projection problem using the Fourier-slice theorem. Additionally, we propose a novel coarse-to-fine hash encoding strategy, significantly enhancing MoCo accuracy. Experiments on multiple MRI datasets show our Moner achieves performance comparable to SOTA MoCo techniques on in-domain data, while demonstrating significant improvements on out-of-domain data. The code is available at: https://github.com/iwuqing/Moner

Xuanyu Tian, Lixuan Chen, Qing Wu et al.

Cardiac magnetic resonance (CMR) imaging is widely used to characterize cardiac morphology and function. To accelerate CMR imaging, various methods have been proposed to recover high-quality spatiotemporal CMR images from highly undersampled k-t space data. However, current CMR reconstruction techniques either fail to achieve satisfactory image quality or are restricted by the scarcity of ground truth data, leading to limited applicability in clinical scenarios. In this work, we proposed MoCo-INR, a new unsupervised method that integrates implicit neural representations (INR) with the conventional motion-compensated (MoCo) framework. Using explicit motion modeling and the continuous prior of INRs, MoCo-INR can produce accurate cardiac motion decomposition and high-quality CMR reconstruction. Furthermore, we introduce a new INR network architecture tailored to the CMR problem, which significantly stabilizes model optimization. Experiments on retrospective (simulated) datasets demonstrate the superiority of MoCo-INR over state-of-the-art methods, achieving fast convergence and fine-detailed reconstructions at ultra-high acceleration factors (e.g., 20x in VISTA sampling). Additionally, evaluations on prospective (real-acquired) free-breathing CMR scans highlight the clinical practicality of MoCo-INR for real-time imaging. Several ablation studies further confirm the effectiveness of the critical components of MoCo-INR.

Chenhe Du, Xiyue Lin, Qing Wu et al.

Limited-angle and sparse-view computed tomography (LACT and SVCT) are crucial for expanding the scope of X-ray CT applications. However, they face challenges due to incomplete data acquisition, resulting in diverse artifacts in the reconstructed CT images. Emerging implicit neural representation (INR) techniques, such as NeRF, NeAT, and NeRP, have shown promise in under-determined CT imaging reconstruction tasks. However, the unsupervised nature of INR architecture imposes limited constraints on the solution space, particularly for the highly ill-posed reconstruction task posed by LACT and ultra-SVCT. In this study, we introduce the Diffusion Prior Driven Neural Representation (DPER), an advanced unsupervised framework designed to address the exceptionally ill-posed CT reconstruction inverse problems. DPER adopts the Half Quadratic Splitting (HQS) algorithm to decompose the inverse problem into data fidelity and distribution prior sub-problems. The two sub-problems are respectively addressed by INR reconstruction scheme and pre-trained score-based diffusion model. This combination first injects the implicit image local consistency prior from INR. Additionally, it effectively augments the feasibility of the solution space for the inverse problem through the generative diffusion model, resulting in increased stability and precision in the solutions. We conduct comprehensive experiments to evaluate the performance of DPER on LACT and ultra-SVCT reconstruction with two public datasets (AAPM and LIDC), an in-house clinical COVID-19 dataset and a public raw projection dataset created by Mayo Clinic. The results show that our method outperforms the state-of-the-art reconstruction methods on in-domain datasets, while achieving significant performance improvements on out-of-domain (OOD) datasets.

Qing Wu, Hongjiang Wei, Jingyi Yu et al.

Ring artifacts are prevalent in 3D cone-beam computed tomography (CBCT) due to non-ideal responses of X-ray detectors, substantially affecting image quality and diagnostic reliability. Existing state-of-the-art (SOTA) ring artifact reduction (RAR) methods rely on supervised learning with large-scale paired CT datasets. While effective in-domain, supervised methods tend to struggle to fully capture the physical characteristics of ring artifacts, leading to pronounced performance drops in complex real-world acquisitions. Moreover, their scalability to 3D CBCT is limited by high memory demands. In this work, we propose Riner, a new unsupervised RAR method. Based on a theoretical analysis of ring artifact formation, we reformulate RAR as a multi-parameter inverse problem, where the non-ideal responses of X-ray detectors are parameterized as solvable physical variables. Using a new differentiable forward model, Riner can jointly learn the implicit neural representation of artifact-free images and estimate the physical parameters directly from CT measurements, without external training data. Additionally, Riner is memory-friendly due to its ray-based optimization, enhancing its usability in large-scale 3D CBCT. Experiments on both simulated and real-world datasets show Riner outperforms existing SOTA supervised methods.

Qing Wu, Yuwei Li, Yawen Sun et al.

High Resolution (HR) medical images provide rich anatomical structure details to facilitate early and accurate diagnosis. In MRI, restricted by hardware capacity, scan time, and patient cooperation ability, isotropic 3D HR image acquisition typically requests long scan time and, results in small spatial coverage and low SNR. Recent studies showed that, with deep convolutional neural networks, isotropic HR MR images could be recovered from low-resolution (LR) input via single image super-resolution (SISR) algorithms. However, most existing SISR methods tend to approach a scale-specific projection between LR and HR images, thus these methods can only deal with a fixed up-sampling rate. For achieving different up-sampling rates, multiple SR networks have to be built up respectively, which is very time-consuming and resource-intensive. In this paper, we propose ArSSR, an Arbitrary Scale Super-Resolution approach for recovering 3D HR MR images. In the ArSSR model, the reconstruction of HR images with different up-scaling rates is defined as learning a continuous implicit voxel function from the observed LR images. Then the SR task is converted to represent the implicit voxel function via deep neural networks from a set of paired HR-LR training examples. The ArSSR model consists of an encoder network and a decoder network. Specifically, the convolutional encoder network is to extract feature maps from the LR input images and the fully-connected decoder network is to approximate the implicit voxel function. Due to the continuity of the learned function, a single ArSSR model can achieve arbitrary up-sampling rate reconstruction of HR images from any input LR image after training. Experimental results on three datasets show that the ArSSR model can achieve state-of-the-art SR performance for 3D HR MR image reconstruction while using a single trained model to achieve arbitrary up-sampling scales.

Qing Wu, Yuwei Li, Lan Xu et al.

For collecting high-quality high-resolution (HR) MR image, we propose a novel image reconstruction network named IREM, which is trained on multiple low-resolution (LR) MR images and achieve an arbitrary up-sampling rate for HR image reconstruction. In this work, we suppose the desired HR image as an implicit continuous function of the 3D image spatial coordinate and the thick-slice LR images as several sparse discrete samplings of this function. Then the super-resolution (SR) task is to learn the continuous volumetric function from a limited observations using an fully-connected neural network combined with Fourier feature positional encoding. By simply minimizing the error between the network prediction and the acquired LR image intensity across each imaging plane, IREM is trained to represent a continuous model of the observed tissue anatomy. Experimental results indicate that IREM succeeds in representing high frequency image feature, and in real scene data collection, IREM reduces scan time and achieves high-quality high-resolution MR imaging in terms of SNR and local image detail.

Zhongping Ji, Xiao Qi, Yigang Wang et al.

3D content creation is referred to as one of the most fundamental tasks of computer graphics. And many 3D modeling algorithms from 2D images or curves have been developed over the past several decades. Designers are allowed to align some conceptual images or sketch some suggestive curves, from front, side, and top views, and then use them as references in constructing a 3D model automatically or manually. However, to the best of our knowledge, no studies have investigated on 3D human body reconstruction in a similar manner. In this paper, we propose a deep learning based reconstruction of 3D human body shape from 2D orthographic views. A novel CNN-based regression network, with two branches corresponding to frontal and lateral views respectively, is designed for estimating 3D human body shape from 2D mask images. We train our networks separately to decouple the feature descriptors which encode the body parameters from different views, and fuse them to estimate an accurate human body shape. In addition, to overcome the shortage of training data required for this purpose, we propose some significantly data augmentation schemes for 3D human body shapes, which can be used to promote further research on this topic. Extensive experimen- tal results demonstrate that visually realistic and accurate reconstructions can be achieved effectively using our algorithm. Requiring only binary mask images, our method can help users create their own digital avatars quickly, and also make it easy to create digital human body for 3D game, virtual reality, online fashion shopping.

Chang Song, Hsin-Pai Cheng, Huanrui Yang et al.

Some recent works revealed that deep neural networks (DNNs) are vulnerable to so-called adversarial attacks where input examples are intentionally perturbed to fool DNNs. In this work, we revisit the DNN training process that includes adversarial examples into the training dataset so as to improve DNN's resilience to adversarial attacks, namely, adversarial training. Our experiments show that different adversarial strengths, i.e., perturbation levels of adversarial examples, have different working zones to resist the attack. Based on the observation, we propose a multi-strength adversarial training method (MAT) that combines the adversarial training examples with different adversarial strengths to defend adversarial attacks. Two training structures - mixed MAT and parallel MAT - are developed to facilitate the tradeoffs between training time and memory occupation. Our results show that MAT can substantially minimize the accuracy degradation of deep learning systems to adversarial attacks on MNIST, CIFAR-10, CIFAR-100, and SVHN.

Chaofei Yang, Qing Wu, Hai Li et al.

Poisoning attack is identified as a severe security threat to machine learning algorithms. In many applications, for example, deep neural network (DNN) models collect public data as the inputs to perform re-training, where the input data can be poisoned. Although poisoning attack against support vector machines (SVM) has been extensively studied before, there is still very limited knowledge about how such attack can be implemented on neural networks (NN), especially DNNs. In this work, we first examine the possibility of applying traditional gradient-based method (named as the direct gradient method) to generate poisoned data against NNs by leveraging the gradient of the target model w.r.t. the normal data. We then propose a generative method to accelerate the generation rate of the poisoned data: an auto-encoder (generator) used to generate poisoned data is updated by a reward function of the loss, and the target NN model (discriminator) receives the poisoned data to calculate the loss w.r.t. the normal data. Our experiment results show that the generative method can speed up the poisoned data generation rate by up to 239.38x compared with the direct gradient method, with slightly lower model accuracy degradation. A countermeasure is also designed to detect such poisoning attack methods by checking the loss of the target model.