Caio Davi

Caio Davi, Ulisses Braga-Neto

For most diseases, building large databases of labeled genetic data is an expensive and time-demanding task. To address this, we introduce genetic Generative Adversarial Networks (gGAN), a semi-supervised approach based on an innovative GAN architecture to create large synthetic genetic data sets starting with a small amount of labeled data and a large amount of unlabeled data. Our goal is to determine the propensity of a new individual to develop the severe form of the illness from their genetic profile alone. The proposed model achieved satisfactory results using real genetic data from different datasets and populations, in which the test populations may not have the same genetic profiles. The proposed model is self-aware and capable of determining whether a new genetic profile has enough compatibility with the data on which the network was trained and is thus suitable for prediction. The code and datasets used can be found at https://github.com/caio-davi/gGAN.

Caio Davi, Ulisses Braga-Neto

Physics-informed neural networks (PINN) have recently emerged as a promising application of deep learning in a wide range of engineering and scientific problems based on partial differential equation (PDE) models. However, evidence shows that PINN training by gradient descent displays pathologies that often prevent convergence when solving PDEs with irregular solutions. In this paper, we propose the use of a particle swarm optimization (PSO) approach to train PINNs. The resulting PSO-PINN algorithm not only mitigates the undesired behaviors of PINNs trained with standard gradient descent but also presents an ensemble approach to PINN that affords the possibility of robust predictions with quantified uncertainty. We also propose PSO-BP-CD (PSO with Back-Propagation and Coefficient Decay), a hybrid PSO variant that combines swarm optimization with gradient descent, putting more weight on the latter as training progresses and the swarm zeros in on a good local optimum. Comprehensive experimental results show that PSO-PINN with the proposed PSO-BP-CD algorithm outperforms PINN ensembles trained with other PSO variants or with pure gradient descent.