CHEM-PHApr 27
Enhancing molecular dynamics with equivariant machine-learned densitiesMihail Bogojeski, Muhammad R. Hasyim, Leslie Vogt-Maranto et al.
Machine-learning interatomic potentials (MLIPs) have enabled molecular dynamics at near ab initio accuracy, yet remain limited to energies and forces by construction, leaving electronic observables such as dipole moments and polarizabilities inaccessible. We introduce DenSNet, a density-first approach to machine-learned electronic structure that learns the Hohenberg--Kohn map from nuclear configurations to the ground-state electron density. Our approach employs an SE(3)-equivariant neural network to predict density coefficients of a flexible atom-centered Gaussian basis, combined with a $Δ$-learning strategy that uses superposed atomic densities as a prior to accelerate training. A second equivariant network then maps the predicted density to the total energy, providing a unified framework for molecular dynamics and electronic structure. We validate DenSNet on ethanol, ethanethiol, and resorcinol, where infrared spectra from machine-learned trajectories show excellent agreement with experimental gas-phase measurements. To test scalability, we train on polythiophene oligomers with 1--6 monomers and extrapolate to chains of up to 12 monomers, generating stable long-time trajectories whose infrared spectra agree with reference density functional theory calculations. Here, we show that reinstating the electron density as the central learned quantity opens a practical route to transferable prediction of spectroscopic and electronic observables in large-scale molecular simulations.
CHEM-PHDec 4, 2021
Using Machine Learning to Find New Density FunctionalsBhupalee Kalita, Kieron Burke
Machine learning has now become an integral part of research and innovation. The field of machine learning density functional theory has continuously expanded over the years while making several noticeable advances. We briefly discuss the status of this field and point out some current and future challenges. We also talk about how state-of-the-art science and technology tools can help overcome these challenges. This draft is a part of the "Roadmap on Machine Learning in Electronic Structure" to be published in Electronic Structure (EST).
CHEM-PHOct 28, 2021
How Well Does Kohn-Sham Regularizer Work for Weakly Correlated Systems?Bhupalee Kalita, Ryan Pederson, Jielun Chen et al.
Kohn-Sham regularizer (KSR) is a differentiable machine learning approach to finding the exchange-correlation functional in Kohn-Sham density functional theory (DFT) that works for strongly correlated systems. Here we test KSR for weak correlation. We propose spin-adapted KSR (sKSR) with trainable local, semilocal, and nonlocal approximations found by minimizing density and total energy loss. We assess the atoms-to-molecules generalizability by training on one-dimensional (1D) H, He, Li, Be, Be$^{++}$ and testing on 1D hydrogen chains, LiH, BeH$_2$, and helium hydride complexes. The generalization error from our semilocal approximation is comparable to other differentiable approaches, but our nonlocal functional outperforms any existing machine learning functionals, predicting ground-state energies of test systems with a mean absolute error of 2.7 milli-Hartrees.
COMP-PHSep 17, 2020
Kohn-Sham equations as regularizer: building prior knowledge into machine-learned physicsLi Li, Stephan Hoyer, Ryan Pederson et al.
Including prior knowledge is important for effective machine learning models in physics, and is usually achieved by explicitly adding loss terms or constraints on model architectures. Prior knowledge embedded in the physics computation itself rarely draws attention. We show that solving the Kohn-Sham equations when training neural networks for the exchange-correlation functional provides an implicit regularization that greatly improves generalization. Two separations suffice for learning the entire one-dimensional H$_2$ dissociation curve within chemical accuracy, including the strongly correlated region. Our models also generalize to unseen types of molecules and overcome self-interaction error.
COMP-PHSep 9, 2016
By-passing the Kohn-Sham equations with machine learningFelix Brockherde, Leslie Vogt, Li Li et al.
Last year, at least 30,000 scientific papers used the Kohn-Sham scheme of density functional theory to solve electronic structure problems in a wide variety of scientific fields, ranging from materials science to biochemistry to astrophysics. Machine learning holds the promise of learning the kinetic energy functional via examples, by-passing the need to solve the Kohn-Sham equations. This should yield substantial savings in computer time, allowing either larger systems or longer time-scales to be tackled, but attempts to machine-learn this functional have been limited by the need to find its derivative. The present work overcomes this difficulty by directly learning the density-potential and energy-density maps for test systems and various molecules. Both improved accuracy and lower computational cost with this method are demonstrated by reproducing DFT energies for a range of molecular geometries generated during molecular dynamics simulations. Moreover, the methodology could be applied directly to quantum chemical calculations, allowing construction of density functionals of quantum-chemical accuracy.
COMP-PHJan 16, 2015
Understanding Kernel Ridge Regression: Common behaviors from simple functions to density functionalsKevin Vu, John Snyder, Li Li et al.
Accurate approximations to density functionals have recently been obtained via machine learning (ML). By applying ML to a simple function of one variable without any random sampling, we extract the qualitative dependence of errors on hyperparameters. We find universal features of the behavior in extreme limits, including both very small and very large length scales, and the noise-free limit. We show how such features arise in ML models of density functionals.
CHEM-PHApr 4, 2014
Understanding Machine-learned Density FunctionalsLi Li, John C. Snyder, Isabelle M. Pelaschier et al.
Kernel ridge regression is used to approximate the kinetic energy of non-interacting fermions in a one-dimensional box as a functional of their density. The properties of different kernels and methods of cross-validation are explored, and highly accurate energies are achieved. Accurate {\em constrained optimal densities} are found via a modified Euler-Lagrange constrained minimization of the total energy. A projected gradient descent algorithm is derived using local principal component analysis. Additionally, a sparse grid representation of the density can be used without degrading the performance of the methods. The implications for machine-learned density functional approximations are discussed.
CHEM-PHJun 7, 2013
Orbital-free Bond Breaking via Machine LearningJohn C. Snyder, Matthias Rupp, Katja Hansen et al.
Machine learning is used to approximate the kinetic energy of one dimensional diatomics as a functional of the electron density. The functional can accurately dissociate a diatomic, and can be systematically improved with training. Highly accurate self-consistent densities and molecular forces are found, indicating the possibility for ab-initio molecular dynamics simulations.