Yeqi Huang

Yeqi Huang, Yue Chen, Yanwei Ye et al.

General-purpose VLMs remain unreliable for biomedical research because valid answers in scientific papers depend on evidence split across figures, tables, charts, captions, and referring text. Existing post-training pipelines are bottlenecked by costly expert annotation and by synthetic data that drops this evidence structure. We present Ryze, a fully automated system that converts raw biomedical papers into an evidence-enriched training set and a domain-specialized VLM. Ryze synthesizes QA pairs with complete supporting evidence (visual element, caption, extracted structure, and referring paragraphs), reduces layout and OCR errors via chart/table-aware extraction and LLM-based cleansing, and applies a progress-gated post-training strategy combining supervised fine-tuning with reinforcement learning. Starting from Qwen3-VL-8B, Ryze produces BioVLM-8B at under USD 200, achieving 48.0% weighted accuracy on LAB-Bench, outperforming the base model by +12.6 percentage points (pp) and surpassing GPT-5.2 by +3.8 pp. We release Ryze as open source together with the trained BioVLM-8B model.

Yinsicheng Jiang, Yeqi Huang, Liang Cheng et al.

Retrieval-augmented generation (RAG) enhances large language models (LLMs) with retrieved context but often suffers from downgraded prefill performance as modern applications demand longer and more complex inputs. Existing caching techniques either preserve accuracy with low cache reuse or improve reuse at the cost of degraded reasoning quality. We present RAGBoost, an efficient RAG system that achieves high cache reuse without sacrificing accuracy through accuracy-preserving context reuse. RAGBoost detects overlapping retrieved items across concurrent sessions and multi-turn interactions, using efficient context indexing, ordering, and de-duplication to maximize reuse, while lightweight contextual hints maintain reasoning fidelity. It integrates seamlessly with existing LLM inference engines and improves their prefill performance by 1.5-3X over state-of-the-art methods, while preserving or even enhancing reasoning accuracy across diverse RAG and agentic AI workloads. Our code is released at: https://github.com/Edinburgh-AgenticAI/RAGBoost.

Congjie He, Yeqi Huang, Pei Mu et al. · microsoft-research

Emerging AI accelerators increasingly adopt wafer-scale manufacturing technologies, integrating hundreds of thousands of AI cores in a mesh architecture with large distributed on-chip memory (tens of GB in total) and ultra-high on-chip memory bandwidth (tens of PB/s). However, current LLM inference systems, optimized for shared memory architectures like GPUs, fail to exploit these accelerators fully. We introduce WaferLLM, the first wafer-scale LLM inference system. WaferLLM is guided by a novel PLMR model (pronounced as "Plummer") that captures the unique hardware characteristics of wafer-scale architectures. Leveraging this model, WaferLLM pioneers wafer-scale LLM parallelism, optimizing the utilization of hundreds of thousands of on-chip cores. It also introduces MeshGEMM and MeshGEMV, the first GEMM and GEMV implementations designed to scale effectively on wafer-scale accelerators. Evaluations show that WaferLLM achieves up to 200$\times$ higher accelerator utilization than state-of-the-art methods. Leveraging a wafer-scale accelerator (Cerebras WSE2), WaferLLM delivers GEMV operations 606$\times$ faster and 16$\times$ more energy-efficient than on an NVIDIA A100 GPU. For full LLM inference, WaferLLM achieves 10-20$\times$ speedups over A100 GPU clusters running SGLang and vLLM. These advantages are expected to grow as wafer-scale AI models, software, and hardware continue to mature. WaferLLM is open-sourced at https://github.com/MeshInfra/WaferLLM.

Yinsicheng Jiang, Yao Fu, Yeqi Huang et al.

The sparse Mixture-of-Experts (MoE) architecture is increasingly favored for scaling Large Language Models (LLMs) efficiently, but it depends on heterogeneous compute and memory resources. These factors jointly affect system Cost, Accuracy, and Performance (CAP), making trade-offs inevitable. Existing benchmarks often fail to capture these trade-offs accurately, complicating practical deployment decisions. To address this, we introduce MoE-CAP, a benchmark specifically designed for MoE systems. Our analysis reveals that achieving an optimal balance across CAP is difficult with current hardware; MoE systems typically optimize two of the three dimensions at the expense of the third-a dynamic we term the MoE-CAP trade-off. To visualize this, we propose the CAP Radar Diagram. We further introduce sparsity-aware performance metrics-Sparse Memory Bandwidth Utilization (S-MBU) and Sparse Model FLOPS Utilization (S-MFU)-to enable accurate performance benchmarking of MoE systems across diverse hardware platforms and deployment scenarios.

Liang Qiao, Yue Dai, Yeqi Huang et al.

Multi-Modal Diffusion Transformers (DiTs) demonstrate exceptional capabilities in visual synthesis, yet their deployment remains constrained by substantial computational demands. To alleviate this bottleneck, many sparsity-based acceleration methods have been proposed. However, their diverse sparsity patterns often require customized kernels for high-performance inference, limiting universality. We propose FlashOmni, a unified sparse attention engine compatible with arbitrary DiT architectures. FlashOmni introduces flexible sparse symbols to standardize the representation of a wide range of sparsity strategies, such as feature caching and block-sparse skipping. This unified abstraction enables the execution of diverse sparse computations within a single attention kernel. In addition, FlashOmni designs optimized sparse GEMMs for attention blocks, leveraging sparse symbols to eliminate redundant computations and further improve efficiency. Experiments demonstrate that FlashOmni delivers near-linear, closely matching the sparsity ratio speedup (1:1) in attention and GEMM-$Q$, and achieves 2.5$\times$-3.8$\times$ acceleration in GEMM-$O$ (max peaking at about 87.5% of the theoretical limit). Applied with a multi-granularity sparsity strategy, it enables the Hunyuan model (33K) to achieve about 1.5$\times$ end-to-end acceleration without degrading visual quality.

Yao Fu, Leyang Xue, Yeqi Huang et al.

This paper presents ServerlessLLM, a distributed system designed to support low-latency serverless inference for Large Language Models (LLMs). By harnessing the substantial near-GPU storage and memory capacities of inference servers, ServerlessLLM achieves effective local checkpoint storage, minimizing the need for remote checkpoint downloads and ensuring efficient checkpoint loading. The design of ServerlessLLM features three core contributions: (i) \emph{fast multi-tier checkpoint loading}, featuring a new loading-optimized checkpoint format and a multi-tier loading system, fully utilizing the bandwidth of complex storage hierarchies on GPU servers; (ii) \emph{efficient live migration of LLM inference}, which enables newly initiated inferences to capitalize on local checkpoint storage while ensuring minimal user interruption; and (iii) \emph{startup-time-optimized model scheduling}, which assesses the locality statuses of checkpoints on each server and schedules the model onto servers that minimize the time to start the inference. Comprehensive evaluations, including microbenchmarks and real-world scenarios, demonstrate that ServerlessLLM dramatically outperforms state-of-the-art serverless systems, reducing latency by 10 - 200X across various LLM inference workloads.