CVApr 10
Vision Transformers for Preoperative CT-Based Prediction of Histopathologic Chemotherapy Response Score in High-Grade Serous Ovarian CarcinomaFrancesca Fati, Felipe Coutinho, Marika Reinius et al.
Purpose. High-grade serous ovarian carcinoma (HGSOC) is characterized by pronounced biological and spatial heterogeneity and is frequently diagnosed at an advanced stage. Neoadjuvant chemotherapy (NACT) followed by delayed primary surgery is commonly employed in patients unsuitable for primary cytoreduction. The Chemotherapy Response Score (CRS) is a validated histopathological biomarker of response to NACT, but it is only available postoperatively. In this study, we investigate whether pre-treatment computed tomography (CT) imaging and clinical data can be used to predict CRS as an investigational decision-support adjunct to inform multidisciplinary team (MDT) discussions regarding expected treatment response. Methods. We proposed a 2.5D multimodal deep learning framework that processes lesion-dense omental slices using a pre-trained Vision Transformer encoder and integrates the resulting visual representations with clinical variables through an intermediate fusion module to predict CRS. Results. Our multimodal model, integrating imaging and clinical data, achieved a ROC-AUC of 0.95 alongside 95% accuracy and 80% precision on the internal test cohort (IEO, n=41 patients). On the external test set (OV04, n=70 patients), it achieved a ROC-AUC of 0.68, alongside 67% accuracy and 75% precision. Conclusion. These preliminary results demonstrate the feasibility of transformer-based deep learning for preoperative prediction of CRS in HGSOC using routine clinical data and CT imaging. As an investigational, pre-treatment decision-support tool, this approach may assist MDT discussions by providing early, non-invasive estimates of treatment response.
IVDec 9, 2024
FedSynthCT-Brain: A Federated Learning Framework for Multi-Institutional Brain MRI-to-CT SynthesisCiro Benito Raggio, Mathias Krohmer Zabaleta, Nils Skupien et al.
The generation of Synthetic Computed Tomography (sCT) images has become a pivotal methodology in modern clinical practice, particularly in the context of Radiotherapy (RT) treatment planning. The use of sCT enables the calculation of doses, pushing towards Magnetic Resonance Imaging (MRI) guided radiotherapy treatments. Deep learning methods for MRI-to-sCT have shown promising results, but their reliance on single-centre training dataset limits generalisation capabilities to diverse clinical settings. Moreover, creating centralised multi-centre datasets may pose privacy concerns. To address the aforementioned issues, we introduced FedSynthCT-Brain, an approach based on the Federated Learning (FL) paradigm for MRI-to-sCT in brain imaging. This is among the first applications of FL for MRI-to-sCT, employing a cross-silo horizontal FL approach that allows multiple centres to collaboratively train a U-Net-based deep learning model. We validated our method using real multicentre data from four European and American centres, simulating heterogeneous scanner types and acquisition modalities, and tested its performance on an independent dataset from a centre outside the federation. In the case of the unseen centre, the federated model achieved a median Mean Absolute Error (MAE) of $102.0$ HU across 23 patients, with an interquartile range of $96.7-110.5$ HU. The median (interquartile range) for the Structural Similarity Index (SSIM) and the Peak Signal to Noise Ratio (PNSR) were $0.89 (0.86-0.89)$ and $26.58 (25.52-27.42)$, respectively. The analysis of the results showed acceptable performances of the federated approach, thus highlighting the potential of FL to enhance MRI-to-sCT to improve generalisability and advancing safe and equitable clinical applications while fostering collaboration and preserving data privacy.
LGNov 25, 2025
Energy-Efficient Federated Learning via Adaptive Encoder Freezing for MRI-to-CT Conversion: A Green AI-Guided ResearchCiro Benito Raggio, Lucia Migliorelli, Nils Skupien et al.
Federated Learning (FL) holds the potential to advance equality in health by enabling diverse institutions to collaboratively train deep learning (DL) models, even with limited data. However, the significant resource requirements of FL often exclude centres with limited computational infrastructure, further widening existing healthcare disparities. To address this issue, we propose a Green AI-oriented adaptive layer-freezing strategy designed to reduce energy consumption and computational load while maintaining model performance. We tested our approach using different federated architectures for Magnetic Resonance Imaging (MRI)-to-Computed Tomography (CT) conversion. The proposed adaptive strategy optimises the federated training by selectively freezing the encoder weights based on the monitored relative difference of the encoder weights from round to round. A patience-based mechanism ensures that freezing only occurs when updates remain consistently minimal. The energy consumption and CO2eq emissions of the federation were tracked using the CodeCarbon library. Compared to equivalent non-frozen counterparts, our approach reduced training time, total energy consumption and CO2eq emissions by up to 23%. At the same time, the MRI-to-CT conversion performance was maintained, with only small variations in the Mean Absolute Error (MAE). Notably, for three out of the five evaluated architectures, no statistically significant differences were observed, while two architectures exhibited statistically significant improvements. Our work aligns with a research paradigm that promotes DL-based frameworks meeting clinical requirements while ensuring climatic, social, and economic sustainability. It lays the groundwork for novel FL evaluation frameworks, advancing privacy, equity and, more broadly, justice in AI-driven healthcare.
MED-PHJun 10, 2025
A Privacy-Preserving Federated Learning Framework for Generalizable CBCT to Synthetic CT Translation in Head and NeckCiro Benito Raggio, Paolo Zaffino, Maria Francesca Spadea
Shortened Abstract Cone-beam computed tomography (CBCT) has become a widely adopted modality for image-guided radiotherapy (IGRT). However, CBCT suffers from increased noise, limited soft-tissue contrast, and artifacts, resulting in unreliable Hounsfield unit values and hindering direct dose calculation. Synthetic CT (sCT) generation from CBCT addresses these issues, especially using deep learning (DL) methods. Existing approaches are limited by institutional heterogeneity, scanner-dependent variations, and data privacy regulations that prevent multi-center data sharing. To overcome these challenges, we propose a cross-silo horizontal federated learning (FL) approach for CBCT-to-sCT synthesis in the head and neck region, extending our FedSynthCT framework. A conditional generative adversarial network was collaboratively trained on data from three European medical centers in the public SynthRAD2025 challenge dataset. The federated model demonstrated effective generalization across centers, with mean absolute error (MAE) ranging from $64.38\pm13.63$ to $85.90\pm7.10$ HU, structural similarity index (SSIM) from $0.882\pm0.022$ to $0.922\pm0.039$, and peak signal-to-noise ratio (PSNR) from $32.86\pm0.94$ to $34.91\pm1.04$ dB. Notably, on an external validation dataset of 60 patients, comparable performance was achieved (MAE: $75.22\pm11.81$ HU, SSIM: $0.904\pm0.034$, PSNR: $33.52\pm2.06$ dB) without additional training, confirming robust generalization despite protocol, scanner differences and registration errors. These findings demonstrate the technical feasibility of FL for CBCT-to-sCT synthesis while preserving data privacy and offer a collaborative solution for developing generalizable models across institutions without centralized data sharing or site-specific fine-tuning.
CVOct 22, 2024
LIMIS: Towards Language-based Interactive Medical Image SegmentationLena Heinemann, Alexander Jaus, Zdravko Marinov et al.
Within this work, we introduce LIMIS: The first purely language-based interactive medical image segmentation model. We achieve this by adapting Grounded SAM to the medical domain and designing a language-based model interaction strategy that allows radiologists to incorporate their knowledge into the segmentation process. LIMIS produces high-quality initial segmentation masks by leveraging medical foundation models and allows users to adapt segmentation masks using only language, opening up interactive segmentation to scenarios where physicians require using their hands for other tasks. We evaluate LIMIS on three publicly available medical datasets in terms of performance and usability with experts from the medical domain confirming its high-quality segmentation masks and its interactive usability.
MED-PHFeb 4, 2021
Deep learning-based synthetic-CT generation in radiotherapy and PET: a reviewMaria Francesca Spadea, Matteo Maspero, Paolo Zaffino et al.
Recently, deep learning (DL)-based methods for the generation of synthetic computed tomography (sCT) have received significant research attention as an alternative to classical ones. We present here a systematic review of these methods by grouping them into three categories, according to their clinical applications: I) To replace CT in magnetic resonance (MR)-based treatment planning. II) Facilitate cone-beam computed tomography (CBCT)-based image-guided adaptive radiotherapy. III) Derive attenuation maps for the correction of positron emission tomography (PET). Appropriate database searching was performed on journal articles published between January 2014 and December 2020. The DL methods' key characteristics were extracted from each eligible study, and a comprehensive comparison among network architectures and metrics was reported. A detailed review of each category was given, highlighting essential contributions, identifying specific challenges, and summarising the achievements. Lastly, the statistics of all the cited works from various aspects were analysed, revealing the popularity and future trends, and the potential of DL-based sCT generation. The current status of DL-based sCT generation was evaluated, assessing the clinical readiness of the presented methods.