Fatemeh Taheri Dezaki

2papers

2 Papers

CVFeb 3, 2021Code
Echo-SyncNet: Self-supervised Cardiac View Synchronization in Echocardiography

Fatemeh Taheri Dezaki, Christina Luong, Tom Ginsberg et al.

In echocardiography (echo), an electrocardiogram (ECG) is conventionally used to temporally align different cardiac views for assessing critical measurements. However, in emergencies or point-of-care situations, acquiring an ECG is often not an option, hence motivating the need for alternative temporal synchronization methods. Here, we propose Echo-SyncNet, a self-supervised learning framework to synchronize various cross-sectional 2D echo series without any external input. The proposed framework takes advantage of both intra-view and inter-view self supervisions. The former relies on spatiotemporal patterns found between the frames of a single echo cine and the latter on the interdependencies between multiple cines. The combined supervisions are used to learn a feature-rich embedding space where multiple echo cines can be temporally synchronized. We evaluate the framework with multiple experiments: 1) Using data from 998 patients, Echo-SyncNet shows promising results for synchronizing Apical 2 chamber and Apical 4 chamber cardiac views; 2) Using data from 3070 patients, our experiments reveal that the learned representations of Echo-SyncNet outperform a supervised deep learning method that is optimized for automatic detection of fine-grained cardiac phase; 3) We show the usefulness of the learned representations in a one-shot learning scenario of cardiac keyframe detection. Without any fine-tuning, keyframes in 1188 validation patient studies are identified by synchronizing them with only one labeled reference study. We do not make any prior assumption about what specific cardiac views are used for training and show that Echo-SyncNet can accurately generalize to views not present in its training set. Project repository: github.com/fatemehtd/Echo-SyncNet.

CVJan 27, 2021
Reciprocal Landmark Detection and Tracking with Extremely Few Annotations

Jianzhe Lin, Ghazal Sahebzamani, Christina Luong et al.

Localization of anatomical landmarks to perform two-dimensional measurements in echocardiography is part of routine clinical workflow in cardiac disease diagnosis. Automatic localization of those landmarks is highly desirable to improve workflow and reduce interobserver variability. Training a machine learning framework to perform such localization is hindered given the sparse nature of gold standard labels; only few percent of cardiac cine series frames are normally manually labeled for clinical use. In this paper, we propose a new end-to-end reciprocal detection and tracking model that is specifically designed to handle the sparse nature of echocardiography labels. The model is trained using few annotated frames across the entire cardiac cine sequence to generate consistent detection and tracking of landmarks, and an adversarial training for the model is proposed to take advantage of these annotated frames. The superiority of the proposed reciprocal model is demonstrated using a series of experiments.