Jonathan Chen

LG
h-index14
3papers
58citations
Novelty45%
AI Score35

3 Papers

28.1LGJan 24, 2025Code
MedAgentBench: A Realistic Virtual EHR Environment to Benchmark Medical LLM Agents

Yixing Jiang, Kameron C. Black, Gloria Geng et al.

Recent large language models (LLMs) have demonstrated significant advancements, particularly in their ability to serve as agents thereby surpassing their traditional role as chatbots. These agents can leverage their planning and tool utilization capabilities to address tasks specified at a high level. However, a standardized dataset to benchmark the agent capabilities of LLMs in medical applications is currently lacking, making the evaluation of LLMs on complex tasks in interactive healthcare environments challenging. To address this gap, we introduce MedAgentBench, a broad evaluation suite designed to assess the agent capabilities of large language models within medical records contexts. MedAgentBench encompasses 300 patient-specific clinically-derived tasks from 10 categories written by human physicians, realistic profiles of 100 patients with over 700,000 data elements, a FHIR-compliant interactive environment, and an accompanying codebase. The environment uses the standard APIs and communication infrastructure used in modern EMR systems, so it can be easily migrated into live EMR systems. MedAgentBench presents an unsaturated agent-oriented benchmark that current state-of-the-art LLMs exhibit some ability to succeed at. The best model (Claude 3.5 Sonnet v2) achieves a success rate of 69.67%. However, there is still substantial space for improvement which gives the community a next direction to optimize. Furthermore, there is significant variation in performance across task categories. MedAgentBench establishes this and is publicly available at https://github.com/stanfordmlgroup/MedAgentBench , offering a valuable framework for model developers to track progress and drive continuous improvements in the agent capabilities of large language models within the medical domain.

23.8LGAug 21, 2024
Reasoning and Tools for Human-Level Forecasting

Elvis Hsieh, Preston Fu, Jonathan Chen

Language models (LMs) trained on web-scale datasets are largely successful due to their ability to memorize large amounts of training data, even if only present in a few examples. These capabilities are often desirable in evaluation on tasks such as question answering but raise questions about whether these models can exhibit genuine reasoning or succeed only at mimicking patterns from the training data. This distinction is particularly salient in forecasting tasks, where the answer is not present in the training data, and the model must reason to make logical deductions. We present Reasoning and Tools for Forecasting (RTF), a framework of reasoning-and-acting (ReAct) agents that can dynamically retrieve updated information and run numerical simulation with equipped tools. We evaluate our model with questions from competitive forecasting platforms and demonstrate that our method is competitive with and can outperform human predictions. This suggests that LMs, with the right tools, can indeed think and adapt like humans, offering valuable insights for real-world decision-making.

2.7CLAug 2, 2025
Asking the Right Questions: Benchmarking Large Language Models in the Development of Clinical Consultation Templates

Liam G. McCoy, Fateme Nateghi Haredasht, Kanav Chopra et al.

This study evaluates the capacity of large language models (LLMs) to generate structured clinical consultation templates for electronic consultation. Using 145 expert-crafted templates developed and routinely used by Stanford's eConsult team, we assess frontier models -- including o3, GPT-4o, Kimi K2, Claude 4 Sonnet, Llama 3 70B, and Gemini 2.5 Pro -- for their ability to produce clinically coherent, concise, and prioritized clinical question schemas. Through a multi-agent pipeline combining prompt optimization, semantic autograding, and prioritization analysis, we show that while models like o3 achieve high comprehensiveness (up to 92.2\%), they consistently generate excessively long templates and fail to correctly prioritize the most clinically important questions under length constraints. Performance varies across specialties, with significant degradation in narrative-driven fields such as psychiatry and pain medicine. Our findings demonstrate that LLMs can enhance structured clinical information exchange between physicians, while highlighting the need for more robust evaluation methods that capture a model's ability to prioritize clinically salient information within the time constraints of real-world physician communication.