Julia Fukuyama

Justin Lin, Julia Fukuyama

In this growing age of data and technology, large black-box models are becoming the norm due to their ability to handle vast amounts of data and learn incredibly complex data patterns. The deficiency of these methods, however, is their inability to explain the prediction process, making them untrustworthy and their use precarious in high-stakes situations. SHapley Additive exPlanations (SHAP) analysis is an explainable AI method growing in popularity for its ability to explain model predictions in terms of the original features. For each sample and feature in the data set, an associated SHAP value quantifies the contribution of that feature to the prediction of that sample. Analysis of these SHAP values provides valuable insight into the model's decision-making process, which can be leveraged to create data-driven solutions. The interpretation of these SHAP values, however, is model-dependent, so there does not exist a universal analysis procedure. To aid in these efforts, we present a detailed investigation of SHAP analysis across various machine learning models and data sets. In uncovering the details and nuance behind SHAP analysis, we hope to empower analysts in this less-explored territory. We also present a novel generalization of the waterfall plot to the multi-classification problem.

Gerardo Flores, Abigail Schiff, Alyssa H. Smith et al.

ML-supported decisions, such as ordering tests or determining preventive custody, often involve binary classification based on probabilistic forecasts. Evaluation frameworks for such forecasts typically consider whether to prioritize independent-decision metrics (e.g., Accuracy) or top-K metrics (e.g., Precision@K), and whether to focus on fixed thresholds or threshold-agnostic measures like AUC-ROC. We highlight that a consequentialist perspective, long advocated by decision theorists, should naturally favor evaluations that support independent decisions using a mixture of thresholds given their prevalence, such as Brier scores and Log loss. However, our empirical analysis reveals a strong preference for top-K metrics or fixed thresholds in evaluations at major conferences like ICML, FAccT, and CHIL. To address this gap, we use this decision-theoretic framework to map evaluation metrics to their optimal use cases, along with a Python package, briertools, to promote the broader adoption of Brier scores. In doing so, we also uncover new theoretical connections, including a reconciliation between the Brier Score and Decision Curve Analysis, which clarifies and responds to a longstanding critique by (Assel, et al. 2017) regarding the clinical utility of proper scoring rules.

Gerardo A. Flores, Alyssa H. Smith, Julia A. Fukuyama et al.

Machine learning-based decision support systems are increasingly deployed in clinical settings, where probabilistic scoring functions are used to inform and prioritize patient management decisions. However, widely used scoring rules, such as accuracy and AUC-ROC, fail to adequately reflect key clinical priorities, including calibration, robustness to distributional shifts, and sensitivity to asymmetric error costs. In this work, we propose a principled yet practical evaluation framework for selecting calibrated thresholded classifiers that explicitly accounts for the uncertainty in class prevalences and domain-specific cost asymmetries often found in clinical settings. Building on the theory of proper scoring rules, particularly the Schervish representation, we derive an adjusted variant of cross-entropy (log score) that averages cost-weighted performance over clinically relevant ranges of class balance. The resulting evaluation is simple to apply, sensitive to clinical deployment conditions, and designed to prioritize models that are both calibrated and robust to real-world variations.

Justin Lin, Julia Fukuyama

In this growing age of data and technology, large black-box models are becoming the norm due to their ability to handle vast amounts of data and learn incredibly complex input-output relationships. The deficiency of these methods, however, is their inability to explain the prediction process, making them untrustworthy and their use precarious in high-stakes situations. SHapley Additive exPlanations (SHAP) analysis is an explainable AI method growing in popularity for its ability to explain model predictions in terms of the original features. For each sample and feature in the data set, we associate a SHAP value that quantifies the contribution of that feature to the prediction of that sample. Clustering these SHAP values can provide insight into the data by grouping samples that not only received the same prediction, but received the same prediction for similar reasons. In doing so, we map the various pathways through which distinct samples arrive at the same prediction. To showcase this methodology, we present a simulated experiment in addition to a case study in Alzheimer's disease using data from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database. We also present a novel generalization of the waterfall plot for multi-classification.