Jingyuan Sun

Kailin Lyu, Kangyi Wu, Pengna Li et al.

LLM-based agents have demonstrated impressive zero-shot performance in vision-language navigation (VLN) tasks. However, most zero-shot methods primarily rely on closed-source LLMs as navigators, which face challenges related to high token costs and potential data leakage risks. Recent efforts have attempted to address this by using open-source LLMs combined with a spatiotemporal CoT framework, but they still fall far short compared to closed-source models. In this work, we identify a critical issue, Navigation Amnesia, through a detailed analysis of the navigation process. This issue leads to navigation failures and amplifies the gap between open-source and closed-source methods. To address this, we propose HiMemVLN, which incorporates a Hierarchical Memory System into a multimodal large model to enhance visual perception recall and long-term localization, mitigating the amnesia issue and improving the agent's navigation performance. Extensive experiments in both simulated and real-world environments demonstrate that HiMemVLN achieves nearly twice the performance of the open-source state-of-the-art method. The code is available at https://github.com/lvkailin0118/HiMemVLN.

Jingyuan Sun, Marie-Francine Moens

To decipher the algorithm underlying the human brain's language representation, previous work probed brain responses to language input with pre-trained artificial neural network (ANN) models fine-tuned on NLU tasks. However, full fine-tuning generally updates the entire parametric space and distorts pre-trained features, cognitively inconsistent with the brain's robust multi-task learning ability. Prompt-tuning, in contrast, protects pre-trained weights and learns task-specific embeddings to fit a task. Could prompt-tuning generate representations that better account for the brain's language representations than fine-tuning? If so, what kind of NLU task leads a pre-trained model to better decode the information represented in the human brain? We investigate these questions by comparing prompt-tuned and fine-tuned representations in neural decoding, that is predicting the linguistic stimulus from the brain activities evoked by the stimulus. We find that on none of the 10 NLU tasks, full fine-tuning significantly outperforms prompt-tuning in neural decoding, implicating that a more brain-consistent tuning method yields representations that better correlate with brain data. Moreover, we identify that tasks dealing with fine-grained concept meaning yield representations that better decode brain activation patterns than other tasks, especially the syntactic chunking task. This indicates that our brain encodes more fine-grained concept information than shallow syntactic information when representing languages.

Han Sun, Sheng Liu, Yizhao Wang et al.

Imitation learning is promising for robotic manipulation, but \emph{precise insertion} in the real world remains difficult due to contact-rich dynamics, tight clearances, and limited demonstrations. Many existing visuomotor policies depend on high-dimensional RGB/point-cloud observations, which can be data-inefficient and generalize poorly under pose variations. In this paper, we study pose-guided imitation learning by using object poses in $\mathrm{SE}(3)$ as compact, object-centric observations for precise insertion tasks. First, we propose a diffusion policy for precise insertion that observes the \emph{relative} $\mathrm{SE}(3)$ pose of the source object with respect to the target object and predicts a future relative pose trajectory as its action. Second, to improve robustness to pose estimation noise, we augment the pose-guided policy with RGBD cues. Specifically, we introduce a goal-conditioned RGBD encoder to capture the discrepancy between current and goal observations. We further propose a pose-guided residual gated fusion module, where pose features provide the primary control signal and RGBD features adaptively compensate when pose estimates are unreliable. We evaluate our methods on six real-robot precise insertion tasks and achieve high performance with only $7$--$10$ demonstrations per task. In our setup, the proposed policies succeed on tasks with clearances down to $0.01$~mm and demonstrate improved data efficiency and generalization over existing baselines. Code will be available at https://github.com/sunhan1997/PoseInsert.

Jingyuan Sun, Mingxiao Li, Marie-Francine Moens

Reconstructing visual stimuli from human brain activities provides a promising opportunity to advance our understanding of the brain's visual system and its connection with computer vision models. Although deep generative models have been employed for this task, the challenge of generating high-quality images with accurate semantics persists due to the intricate underlying representations of brain signals and the limited availability of parallel data. In this paper, we propose a two-phase framework named Contrast and Diffuse (CnD) to decode realistic images from functional magnetic resonance imaging (fMRI) recordings. In the first phase, we acquire representations of fMRI data through self-supervised contrastive learning. In the second phase, the encoded fMRI representations condition the diffusion model to reconstruct visual stimulus through our proposed concept-aware conditioning method. Experimental results show that CnD reconstructs highly plausible images on challenging benchmarks. We also provide a quantitative interpretation of the connection between the latent diffusion model (LDM) components and the human brain's visual system. In summary, we present an effective approach for reconstructing visual stimuli based on human brain activity and offer a novel framework to understand the relationship between the diffusion model and the human brain visual system.

Yang Cui, Jingyuan Sun, Yizheng Sun et al.

How the brain supports language across different languages is a basic question in neuroscience and a useful test for multilingual artificial intelligence. Neuroimaging has identified language-responsive brain regions across languages, but it cannot by itself show whether the underlying processing is shared or language-specific. Here we use six multilingual large language models (LLMs) as controllable systems and create targeted ``computational lesions'' by zeroing small parameter sets that are important across languages or especially important for one language. We then compare intact and lesioned models in predicting functional magnetic resonance imaging (fMRI) responses during 100 minutes of naturalistic story listening in native English, Chinese and French (112 participants). Lesioning a compact shared core reduces whole-brain encoding correlation by 60.32% relative to intact models, whereas language-specific lesions preserve cross-language separation in embedding space but selectively weaken brain predictivity for the matched native language. These results support a shared backbone with embedded specializations and provide a causal framework for studying multilingual brain-model alignment.

Jingyuan Sun, Xiaohan Zhang, Marie-Francine Moens

To understand the algorithm that supports the human brain's language representation, previous research has attempted to predict neural responses to linguistic stimuli using embeddings generated by artificial neural networks (ANNs), a process known as neural encoding. However, most of these studies have focused on probing neural representations of Germanic languages, such as English, with unsupervised ANNs. In this paper, we propose to bridge the gap between human brain and supervised ANN representations of the Chinese language. Specifically, we investigate how task tuning influences a pretained Transformer for neural encoding and which tasks lead to the best encoding performances. We generate supervised representations on eight Natural Language Understanding (NLU) tasks using prompt-tuning, a technique that is seldom explored in neural encoding for language. We demonstrate that prompt-tuning yields representations that better predict neural responses to Chinese stimuli than traditional fine-tuning on four tasks. Furthermore, we discover that tasks that require a fine-grained processing of concepts and entities lead to representations that are most predictive of brain activation patterns. Additionally, we reveal that the proportion of tuned parameters highly influences the neural encoding performance of fine-tuned models. Overall, our experimental findings could help us better understand the relationship between supervised artificial and brain language representations.

Yifan Wang, Jichen Zheng, Jingyuan Sun et al.

Large language models (LLMs) increasingly exhibit human-like linguistic behaviors and internal representations that they could serve as computational simulators of language cognition. We ask whether LLMs can be systematically manipulated to reproduce language-production impairments characteristic of aphasia following focal brain lesions. Such models could provide scalable proxies for testing rehabilitation hypotheses, and offer a controlled framework for probing the functional organization of language. We introduce a clinically grounded, component-level framework that simulates aphasia by selectively perturbing functional components in LLMs, and apply it to both modular Mixture-of-Experts models and dense Transformers using a unified intervention interface. Our pipeline (i) identifies subtype-linked components for Broca's and Wernicke's aphasia, (ii) interprets these components with linguistic probing tasks, and (iii) induces graded impairments by progressively perturbing the top-k subtype-linked components, evaluating outcomes with Western Aphasia Battery (WAB) subtests summarized by Aphasia Quotient (AQ). Across architectures and lesioning strategies, subtype-targeted perturbations yield more systematic, aphasia-like regressions than size-matched random perturbations, and MoE modularity supports more localized and interpretable phenotype-to-component mappings. These findings suggest that modular LLMs, combined with clinically informed component perturbations, provide a promising platform for simulating aphasic language production and studying how distinct language functions degrade under targeted disruptions.

Wei Sun, Mingxiao Li, Jingyuan Sun et al.

Argument structure learning~(ASL) entails predicting relations between arguments. Because it can structure a document to facilitate its understanding, it has been widely applied in many fields~(medical, commercial, and scientific domains). Despite its broad utilization, ASL remains a challenging task because it involves examining the complex relationships between the sentences in a potentially unstructured discourse. To resolve this problem, we have developed a simple yet effective approach called Dual-tower Multi-scale cOnvolution neural Network~(DMON) for the ASL task. Specifically, we organize arguments into a relationship matrix that together with the argument embeddings forms a relationship tensor and design a mechanism to capture relations with contextual arguments. Experimental results on three different-domain argument mining datasets demonstrate that our framework outperforms state-of-the-art models. The code is available at https://github.com/VRCMF/DMON.git .

Jingyuan Sun, Mingxiao Li, Zijiao Chen et al.

In the pursuit to understand the intricacies of human brain's visual processing, reconstructing dynamic visual experiences from brain activities emerges as a challenging yet fascinating endeavor. While recent advancements have achieved success in reconstructing static images from non-invasive brain recordings, the domain of translating continuous brain activities into video format remains underexplored. In this work, we introduce NeuroCine, a novel dual-phase framework to targeting the inherent challenges of decoding fMRI data, such as noises, spatial redundancy and temporal lags. This framework proposes spatial masking and temporal interpolation-based augmentation for contrastive learning fMRI representations and a diffusion model enhanced by dependent prior noise for video generation. Tested on a publicly available fMRI dataset, our method shows promising results, outperforming the previous state-of-the-art models by a notable margin of ${20.97\%}$, ${31.00\%}$ and ${12.30\%}$ respectively on decoding the brain activities of three subjects in the fMRI dataset, as measured by SSIM. Additionally, our attention analysis suggests that the model aligns with existing brain structures and functions, indicating its biological plausibility and interpretability.

Xinpei Zhao, Jingyuan Sun, Shaonan Wang et al.

Decoding continuous language from brain activity is a formidable yet promising field of research. It is particularly significant for aiding people with speech disabilities to communicate through brain signals. This field addresses the complex task of mapping brain signals to text. The previous best attempt reverse-engineered this process in an indirect way: it began by learning to encode brain activity from text and then guided text generation by aligning with predicted brain responses. In contrast, we propose a simple yet effective method that guides text reconstruction by directly comparing them with the predicted text embeddings mapped from brain activities. Comprehensive experiments reveal that our method significantly outperforms the current state-of-the-art model, showing average improvements of 77% and 54% on BLEU and METEOR scores. We further validate the proposed modules through detailed ablation studies and case analyses and highlight a critical correlation: the more precisely we map brain activities to text embeddings, the better the text reconstruction results. Such insight can simplify the task of reconstructing language from brain activities for future work, emphasizing the importance of improving brain-to-text-embedding mapping techniques.

Shaonan Wang, Jingyuan Sun, Yunhao Zhang et al.

Despite differing from the human language processing mechanism in implementation and algorithms, current language models demonstrate remarkable human-like or surpassing language capabilities. Should computational language models be employed in studying the brain, and if so, when and how? To delve into this topic, this paper reviews efforts in using computational models for brain research, highlighting emerging trends. To ensure a fair comparison, the paper evaluates various computational models using consistent metrics on the same dataset. Our analysis reveals that no single model outperforms others on all datasets, underscoring the need for rich testing datasets and rigid experimental control to draw robust conclusions in studies involving computational models.

Yizheng Sun, Yanze Xin, Hao Li et al.

Multi-modal Large Language Models (MLLMs) have achieved remarkable success by integrating visual and textual modalities. However, they incur significant computational overhead due to the large number of vision tokens processed, limiting their practicality in resource-constrained environments. We introduce Language-Guided Vision Token Pruning (LVPruning) for MLLMs, an effective yet simple method that significantly reduces the computational burden while preserving model performance. LVPruning employs cross-attention modules to compute the importance of vision tokens based on their interaction with language tokens, determining which to prune. Importantly, LVPruning can be integrated without modifying the original MLLM parameters, which makes LVPruning simple to apply or remove. Our experiments show that LVPruning can effectively reduce up to 90% of vision tokens by the middle layer of LLaVA-1.5, resulting in a 62.1% decrease in inference Tera Floating-Point Operations Per Second (TFLOPs), with an average performance loss of just 0.45% across nine multi-modal benchmarks.

Hao Li, Bowen Deng, Chang Xu et al.

A unified foundation model for medical time series -- pretrained on open access and ethics board-approved medical corpora -- offers the potential to reduce annotation burdens, minimize model customization, and enable robust transfer across clinical institutions, modalities, and tasks, particularly in data-scarce or privacy-constrained environments. However, existing generalist time series foundation models struggle to handle medical time series data due to their inherent challenges, including irregular intervals, heterogeneous sampling rates, and frequent missing values. To address these challenges, we introduce MIRA, a unified foundation model specifically designed for medical time series forecasting. MIRA incorporates a Continuous-Time Rotary Positional Encoding that enables fine-grained modeling of variable time intervals, a frequency-specific mixture-of-experts layer that routes computation across latent frequency regimes to further promote temporal specialization, and a Continuous Dynamics Extrapolation Block based on Neural ODE that models the continuous trajectory of latent states, enabling accurate forecasting at arbitrary target timestamps. Pretrained on a large-scale and diverse medical corpus comprising over 454 billion time points collect from publicly available datasets, MIRA achieves reductions in forecasting errors by an average of 10% and 7% in out-of-distribution and in-distribution scenarios, respectively, when compared to other zero-shot and fine-tuned baselines. We also introduce a comprehensive benchmark spanning multiple downstream clinical tasks, establishing a foundation for future research in medical time series modeling.

Chunyu Ye, Yunhao Zhang, Jingyuan Sun et al.

Decoding language from the human brain remains a grand challenge for Brain-Computer Interfaces (BCIs). Current approaches typically rely on unimodal brain representations, neglecting the brain's inherently multimodal processing. Inspired by the brain's associative mechanisms, where viewing an image can evoke related sounds and linguistic representations, we propose a unified framework that leverages Multimodal Large Language Models (MLLMs) to align brain signals with a shared semantic space encompassing text, images, and audio. A router module dynamically selects and fuses modality-specific brain features according to the characteristics of each stimulus. Experiments on various fMRI datasets with textual, visual, and auditory stimuli demonstrate state-of-the-art performance, achieving an 8.48% improvement on the most commonly used benchmark. We further extend our framework to EEG and MEG data, demonstrating flexibility and robustness across varying temporal and spatial resolutions. To our knowledge, this is the first unified BCI architecture capable of robustly decoding multimodal brain activity across diverse brain signals and stimulus types, offering a flexible solution for real-world applications.

Haiping Liu, Lijing Lin, Jingyuan Sun et al.

Rotary Position Embedding (RoPE) is widely adopted in large language models (LLMs) due to its efficient encoding of relative positions with strong extrapolation capabilities. However, while its application in higher-dimensional input domains, such as 2D images, have been explored in several attempts, a unified theoretical framework is still lacking. To address this, we propose a systematic mathematical framework for RoPE grounded in Lie group and Lie algebra theory. We derive the necessary and sufficient conditions for any valid $N$-dimensional RoPE based on two core properties of RoPE - relativity and reversibility. We demonstrate that RoPE can be characterized as a basis of a maximal abelian subalgebra (MASA) in the special orthogonal Lie algebra, and that the commonly used axis-aligned block-diagonal RoPE, where each input axis is encoded by an independent 2x2 rotation block, corresponds to the maximal toral subalgebra. Furthermore, we reduce spatial inter-dimensional interactions to a change of basis, resolved by learning an orthogonal transformation. Our experiment results suggest that inter-dimensional interactions should be balanced with local structure preservation. Overall, our framework unifies and explains existing RoPE designs while enabling principled extensions to higher-dimensional modalities and tasks.

Yizheng Sun, Hao Li, Chang Xu et al.

Vision-Language Models (VLMs) are powerful yet computationally intensive for widespread practical deployments. To address such challenge without costly re-training, post-training acceleration techniques like quantization and token reduction are extensively explored. However, current acceleration evaluations primarily target minimal overall performance degradation, overlooking a crucial question: does the accelerated model still give the same answers to the same questions as it did before acceleration? This is vital for stability-centered industrial applications where consistently correct answers for specific, known situations are paramount, such as in AI-based disease diagnosis. We systematically investigate this for accelerated VLMs, testing four leading models (LLaVA-1.5, LLaVA-Next, Qwen2-VL, Qwen2.5-VL) with eight acceleration methods on ten multi-modal benchmarks. Our findings are stark: despite minimal aggregate performance drops, accelerated models changed original answers up to 20% of the time. Critically, up to 6.5% of these changes converted correct answers to incorrect. Input perturbations magnified these inconsistencies, and the trend is confirmed by case studies with the medical VLM LLaVA-Med. This research reveals a significant oversight in VLM acceleration, stressing an urgent need for instance-level stability checks to ensure trustworthy real-world deployment.

Nathan Cornille, Florian Mai, Jingyuan Sun et al.

Through end-to-end training to predict the next token, LLMs have become valuable tools for various tasks. Enhancing their core training in language modeling can improve numerous downstream applications. A successful approach to enhance language modeling uses a separate planning module to predict abstract labels of future sentences and conditions the LM on these predictions. However, this method is non-differentiable, preventing joint end-to-end tuning of the planner with the LM. We propose an effective method to improve this approach by enabling joint fine-tuning of the planner and the LM. We show that a naive way of approximating the gradient of selecting a label via the straight-through estimator is not effective. Instead, we propose to use the predicted label probabilities as mixing weights to condition the LM on a weighted average of label embeddings in a differentiable manner. This not only enables joint fine-tuning of the planner and the LM, but also allows the LM to draw on the full label distribution predicted by the planner, retaining more information. Our experimental results show consistent improvements in perplexity.

Jingyuan Sun, Mingxiao Li, Zijiao Chen et al.

Decoding visual stimuli from neural responses recorded by functional Magnetic Resonance Imaging (fMRI) presents an intriguing intersection between cognitive neuroscience and machine learning, promising advancements in understanding human visual perception and building non-invasive brain-machine interfaces. However, the task is challenging due to the noisy nature of fMRI signals and the intricate pattern of brain visual representations. To mitigate these challenges, we introduce a two-phase fMRI representation learning framework. The first phase pre-trains an fMRI feature learner with a proposed Double-contrastive Mask Auto-encoder to learn denoised representations. The second phase tunes the feature learner to attend to neural activation patterns most informative for visual reconstruction with guidance from an image auto-encoder. The optimized fMRI feature learner then conditions a latent diffusion model to reconstruct image stimuli from brain activities. Experimental results demonstrate our model's superiority in generating high-resolution and semantically accurate images, substantially exceeding previous state-of-the-art methods by 39.34% in the 50-way-top-1 semantic classification accuracy. Our research invites further exploration of the decoding task's potential and contributes to the development of non-invasive brain-machine interfaces.