IVApr 13, 2021Code
Fibro-CoSANet: Pulmonary Fibrosis Prognosis Prediction using a Convolutional Self Attention NetworkZabir Al Nazi, Fazla Rabbi Mashrur, Md Amirul Islam et al.
Idiopathic pulmonary fibrosis (IPF) is a restrictive interstitial lung disease that causes lung function decline by lung tissue scarring. Although lung function decline is assessed by the forced vital capacity (FVC), determining the accurate progression of IPF remains a challenge. To address this challenge, we proposed Fibro-CoSANet, a novel end-to-end multi-modal learning-based approach, to predict the FVC decline. Fibro-CoSANet utilized CT images and demographic information in convolutional neural network frameworks with a stacked attention layer. Extensive experiments on the OSIC Pulmonary Fibrosis Progression Dataset demonstrated the superiority of our proposed Fibro-CoSANet by achieving the new state-of-the-art modified Laplace Log-Likelihood score of -6.68. This network may benefit research areas concerned with designing networks to improve the prognostic accuracy of IPF. The source-code for Fibro-CoSANet is available at: \url{https://github.com/zabir-nabil/Fibro-CoSANet}.
IVFeb 11, 2021
COVID-19 identification from volumetric chest CT scans using a progressively resized 3D-CNN incorporating segmentation, augmentation, and class-rebalancingMd. Kamrul Hasan, Md. Tasnim Jawad, Kazi Nasim Imtiaz Hasan et al.
The novel COVID-19 is a global pandemic disease overgrowing worldwide. Computer-aided screening tools with greater sensitivity is imperative for disease diagnosis and prognosis as early as possible. It also can be a helpful tool in triage for testing and clinical supervision of COVID-19 patients. However, designing such an automated tool from non-invasive radiographic images is challenging as many manually annotated datasets are not publicly available yet, which is the essential core requirement of supervised learning schemes. This article proposes a 3D Convolutional Neural Network (CNN)-based classification approach considering both the inter- and intra-slice spatial voxel information. The proposed system is trained in an end-to-end manner on the 3D patches from the whole volumetric CT images to enlarge the number of training samples, performing the ablation studies on patch size determination. We integrate progressive resizing, segmentation, augmentations, and class-rebalancing to our 3D network. The segmentation is a critical prerequisite step for COVID-19 diagnosis enabling the classifier to learn prominent lung features while excluding the outer lung regions of the CT scans. We evaluate all the extensive experiments on a publicly available dataset, named MosMed, having binary- and multi-class chest CT image partitions. Our experimental results are very encouraging, yielding areas under the ROC curve of 0.914 and 0.893 for the binary- and multi-class tasks, respectively, applying 5-fold cross-validations. Our method's promising results delegate it as a favorable aiding tool for clinical practitioners and radiologists to assess COVID-19.