Aude Sportisse

Irene Balelli, Aude Sportisse, Francesco Cremonesi et al.

Federated learning allows for the training of machine learning models on multiple decentralized local datasets without requiring explicit data exchange. However, data pre-processing, including strategies for handling missing data, remains a major bottleneck in real-world federated learning deployment, and is typically performed locally. This approach may be biased, since the subpopulations locally observed at each center may not be representative of the overall one. To address this issue, this paper first proposes a more consistent approach to data standardization through a federated model. Additionally, we propose Fed-MIWAE, a federated version of the state-of-the-art imputation method MIWAE, a deep latent variable model for missing data imputation based on variational autoencoders. MIWAE has the great advantage of being easily trainable with classical federated aggregators. Furthermore, it is able to deal with MAR (Missing At Random) data, a more challenging missing-data mechanism than MCAR (Missing Completely At Random), where the missingness of a variable can depend on the observed ones. We evaluate our method on multi-modal medical imaging data and clinical scores from a simulated federated scenario with the ADNI dataset. We compare Fed-MIWAE with respect to classical imputation methods, either performed locally or in a centralized fashion. Fed-MIWAE allows to achieve imputation accuracy comparable with the best centralized method, even when local data distributions are highly heterogeneous. In addition, thanks to the variational nature of Fed-MIWAE, our method is designed to perform multiple imputation, allowing for the quantification of the imputation uncertainty in the federated scenario.

Ali Aghababaei-Harandi, Aude Sportisse, Massih-Reza Amini

Semi-supervised learning has emerged as a powerful paradigm for leveraging large amounts of unlabeled data to improve the performance of machine learning models when labeled data are scarce. Among existing approaches, methods derived from FixMatch have achieved state-of-the-art results in image classification by combining weak and strong data augmentations with confidence-based pseudo-labeling. Despite their strong empirical performance, these methods typically struggle with two critical bottlenecks: majority classes tend to dominate the learning process, which is amplified by incorrect pseudo-labels, leading to biased models. Furthermore, noisy early pseudo-labels prevent the model from forming clear decision boundaries, requiring prolonged training to learn informative representation. In this paper, we introduce a paradigm shift from conventional logical output threshold base, toward an explicit shaping of geometric representations. Our approach is inspired by the recently proposed Latent-Euclidean Joint-Embedding Predictive Architectures (LeJEPA), a theoretically grounded framework asserting that meaningful representations should exhibit an isotropic Gaussian structure in latent space. Building on this principle, we propose a new training objective that combines the classical semi-supervised loss used in FlexMatch, an adaptive extension of FixMatch, with a latent-space regularization term derived from LeJEPA. Our proposed approach, encourages well-structured representations while preserving the advantages of pseudo-labeling strategies. Through extensive experiments on CIFAR-100, STL-10 and Tiny-ImageNet, we demonstrate that the proposed method consistently outperforms existing baselines. In addition, our method significantly accelerates the convergence, drastically reducing the overall computational cost compared to standard FixMatch-based pipelines.

Aude Sportisse, Matthieu Marbac, Fabien Laporte et al.

Model-based unsupervised learning, as any learning task, stalls as soon as missing data occurs. This is even more true when the missing data are informative, or said missing not at random (MNAR). In this paper, we propose model-based clustering algorithms designed to handle very general types of missing data, including MNAR data. To do so, we introduce a mixture model for different types of data (continuous, count, categorical and mixed) to jointly model the data distribution and the MNAR mechanism, remaining vigilant to the relative degrees of freedom of each. Several MNAR models are discussed, for which the cause of the missingness can depend on both the values of the missing variable themselves and on the class membership. However, we focus on a specific MNAR model, called MNARz, for which the missingness only depends on the class membership. We first underline its ease of estimation, by showing that the statistical inference can be carried out on the data matrix concatenated with the missing mask considering finally a standard MAR mechanism. Consequently, we propose to perform clustering using the Expectation Maximization algorithm, specially developed for this simplified reinterpretation. Finally, we assess the numerical performances of the proposed methods on synthetic data and on the real medical registry TraumaBase as well.