Anthony M. DeGennaro

Tatiana Konstantinova, Lutz Wiegart, Maksim Rakitin et al.

Like other experimental techniques, X-ray Photon Correlation Spectroscopy is subject to various kinds of noise. Random and correlated fluctuations and heterogeneities can be present in a two-time correlation function and obscure the information about the intrinsic dynamics of a sample. Simultaneously addressing the disparate origins of noise in the experimental data is challenging. We propose a computational approach for improving the signal-to-noise ratio in two-time correlation functions that is based on Convolutional Neural Network Encoder-Decoder (CNN-ED) models. Such models extract features from an image via convolutional layers, project them to a low dimensional space and then reconstruct a clean image from this reduced representation via transposed convolutional layers. Not only are ED models a general tool for random noise removal, but their application to low signal-to-noise data can enhance the data quantitative usage since they are able to learn the functional form of the signal. We demonstrate that the CNN-ED models trained on real-world experimental data help to effectively extract equilibrium dynamics parameters from two-time correlation functions, containing statistical noise and dynamic heterogeneities. Strategies for optimizing the models performance and their applicability limits are discussed.

Anthony M. DeGennaro, Nathan M. Urban

The Koopman operator is a linear, infinite-dimensional operator that governs the dynamics of system observables; Extended Dynamic Mode Decomposition (EDMD) is a data-driven method for approximating the Koopman operator using functions (features) of the system state snapshots. This paper investigates an approach to EDMD in which the features used provide random approximations to a particular kernel function. The objective of this is computational economy for large data sets: EDMD is generally ill-suited for problems with large state dimension, and its dual kernel formulation (KDMD) is well-suited for such problems only if the number of data snapshots is relatively small. We discuss two specific methods for generating features: random Fourier features, and the Nystrom method. The first method is a data-independent method for translation-invariant kernels only and involves random sampling in feature space; the second method is a data-dependent empirical method that may be used for any kernel and involves random sampling of data. We first discuss how these ideas may be applied in an EDMD context, as well as a means for adaptively adding random Fourier features. We demonstrate these methods on two example problems and conclude with an analysis of the relative benefits and drawbacks of each method.