Jingzhe Jiang

Zhexiang Zhang, Ye Wang, Yumiao Zhao et al.

Serving large Mixture-of-Experts (MoE) models is challenging because of their large memory footprints, heterogeneous resource demands, and highly dynamic inference workloads. Most existing MoE inference systems deploy the entire model as a monolithic unit, forcing attention and MoE layers to share the same resource configuration despite their different scaling behaviors and resource bottlenecks. Such coarse-grained provisioning leads to resource inefficiency and suboptimal performance. We present JANUS, a scalable and resource-efficient MoE inference system built around three key principles. First, JANUS disaggregates attention and MoE layers onto separate GPU worker pools, enabling independent resource provisioning for the two layer types, and uses an adaptive two-phase communication mechanism for low-latency data exchange. Second, because MoE-layer execution is often memory-bound and highly sensitive to activated-expert imbalance, JANUS introduces a lightweight, microsecond-scale activation scheduler that balances per-layer activated experts across MoE instances to reduce inference latency. Third, JANUS employs a fine-grained, SLO-aware resource scaling scheme that jointly selects attention resources, MoE resources, and expert placement to minimize GPU cost under token-level SLOs. Evaluation shows that JANUS improves per-GPU throughput by up to 4.7x over state-of-the-art MoE inference baselines while satisfying token-level latency SLOs.

Jiayu Shang, Jingzhe Jiang, Yanni Sun

Motivation: Bacteriophages (aka phages), which mainly infect bacteria, play key roles in the biology of microbes. As the most abundant biological entities on the planet, the number of discovered phages is only the tip of the iceberg. Recently, many new phages have been revealed using high throughput sequencing, particularly metagenomic sequencing. Compared to the fast accumulation of phage-like sequences, there is a serious lag in taxonomic classification of phages. High diversity, abundance, and limited known phages pose great challenges for taxonomic analysis. In particular, alignment-based tools have difficulty in classifying fast accumulating contigs assembled from metagenomic data. Results: In this work, we present a novel semi-supervised learning model, named PhaGCN, to conduct taxonomic classification for phage contigs. In this learning model, we construct a knowledge graph by combining the DNA sequence features learned by convolutional neural network (CNN) and protein sequence similarity gained from gene-sharing network. Then we apply graph convolutional network (GCN) to utilize both the labeled and unlabeled samples in training to enhance the learning ability. We tested PhaGCN on both simulated and real sequencing data. The results clearly show that our method competes favorably against available phage classification tools.