Subhash Chandra Pujari

Qingyu Chen, Alexis Allot, Robert Leaman et al.

The COVID-19 pandemic has been severely impacting global society since December 2019. Massive research has been undertaken to understand the characteristics of the virus and design vaccines and drugs. The related findings have been reported in biomedical literature at a rate of about 10,000 articles on COVID-19 per month. Such rapid growth significantly challenges manual curation and interpretation. For instance, LitCovid is a literature database of COVID-19-related articles in PubMed, which has accumulated more than 200,000 articles with millions of accesses each month by users worldwide. One primary curation task is to assign up to eight topics (e.g., Diagnosis and Treatment) to the articles in LitCovid. Despite the continuing advances in biomedical text mining methods, few have been dedicated to topic annotations in COVID-19 literature. To close the gap, we organized the BioCreative LitCovid track to call for a community effort to tackle automated topic annotation for COVID-19 literature. The BioCreative LitCovid dataset, consisting of over 30,000 articles with manually reviewed topics, was created for training and testing. It is one of the largest multilabel classification datasets in biomedical scientific literature. 19 teams worldwide participated and made 80 submissions in total. Most teams used hybrid systems based on transformers. The highest performing submissions achieved 0.8875, 0.9181, and 0.9394 for macro F1-score, micro F1-score, and instance-based F1-score, respectively. The level of participation and results demonstrate a successful track and help close the gap between dataset curation and method development. The dataset is publicly available via https://ftp.ncbi.nlm.nih.gov/pub/lu/LitCovid/biocreative/ for benchmarking and further development.

Lukas Lange, Marc Müller, Ghazaleh Haratinezhad Torbati et al.

Monitoring the threat landscape to be aware of actual or potential attacks is of utmost importance to cybersecurity professionals. Information about cyber threats is typically distributed using natural language reports. Natural language processing can help with managing this large amount of unstructured information, yet to date, the topic has received little attention. With this paper, we present AnnoCTR, a new CC-BY-SA-licensed dataset of cyber threat reports. The reports have been annotated by a domain expert with named entities, temporal expressions, and cybersecurity-specific concepts including implicitly mentioned techniques and tactics. Entities and concepts are linked to Wikipedia and the MITRE ATT&CK knowledge base, the most widely-used taxonomy for classifying types of attacks. Prior datasets linking to MITRE ATT&CK either provide a single label per document or annotate sentences out-of-context; our dataset annotates entire documents in a much finer-grained way. In an experimental study, we model the annotations of our dataset using state-of-the-art neural models. In our few-shot scenario, we find that for identifying the MITRE ATT&CK concepts that are mentioned explicitly or implicitly in a text, concept descriptions from MITRE ATT&CK are an effective source for training data augmentation.

Dominik Kowald, Subhash Pujari, Elisabeth Lex

Hashtags have become a powerful tool in social platforms such as Twitter to categorize and search for content, and to spread short messages across members of the social network. In this paper, we study temporal hashtag usage practices in Twitter with the aim of designing a cognitive-inspired hashtag recommendation algorithm we call BLLi,s. Our main idea is to incorporate the effect of time on (i) individual hashtag reuse (i.e., reusing own hashtags), and (ii) social hashtag reuse (i.e., reusing hashtags, which has been previously used by a followee) into a predictive model. For this, we turn to the Base-Level Learning (BLL) equation from the cognitive architecture ACT-R, which accounts for the time-dependent decay of item exposure in human memory. We validate BLLi,s using two crawled Twitter datasets in two evaluation scenarios: firstly, only temporal usage patterns of past hashtag assignments are utilized and secondly, these patterns are combined with a content-based analysis of the current tweet. In both scenarios, we find not only that temporal effects play an important role for both individual and social hashtag reuse but also that BLLi,s provides significantly better prediction accuracy and ranking results than current state-of-the-art hashtag recommendation methods.