Chao Yang

h-index20
2papers
1,405citations

2 Papers

7.8MLJan 26, 2025
Estimating Committor Functions via Deep Adaptive Sampling on Rare Transition Paths

Yueyang Wang, Kejun Tang, Xili Wang et al.

The committor functions are central to investigating rare but important events in molecular simulations. It is known that computing the committor function suffers from the curse of dimensionality. Recently, using neural networks to estimate the committor function has gained attention due to its potential for high-dimensional problems. Training neural networks to approximate the committor function needs to sample transition data from straightforward simulations of rare events, which is very inefficient. The scarcity of transition data makes it challenging to approximate the committor function. To address this problem, we propose an efficient framework to generate data points in the transition state region that helps train neural networks to approximate the committor function. We design a Deep Adaptive Sampling method for TRansition paths (DASTR), where deep generative models are employed to generate samples to capture the information of transitions effectively. In particular, we treat a non-negative function in the integrand of the loss functional as an unnormalized probability density function and approximate it with the deep generative model. The new samples from the deep generative model are located in the transition state region and fewer samples are located in the other region. This distribution provides effective samples for approximating the committor function and significantly improves the accuracy. We demonstrate the effectiveness of the proposed method through both simulations and realistic examples.

17.6NAApr 14, 2020
PFNN: A Penalty-Free Neural Network Method for Solving a Class of Second-Order Boundary-Value Problems on Complex Geometries

Hailong Sheng, Chao Yang

We present PFNN, a penalty-free neural network method, to efficiently solve a class of second-order boundary-value problems on complex geometries. To reduce the smoothness requirement, the original problem is reformulated to a weak form so that the evaluations of high-order derivatives are avoided. Two neural networks, rather than just one, are employed to construct the approximate solution, with one network satisfying the essential boundary conditions and the other handling the rest part of the domain. In this way, an unconstrained optimization problem, instead of a constrained one, is solved without adding any penalty terms. The entanglement of the two networks is eliminated with the help of a length factor function that is scale invariant and can adapt with complex geometries. We prove the convergence of the PFNN method and conduct numerical experiments on a series of linear and nonlinear second-order boundary-value problems to demonstrate that PFNN is superior to several existing approaches in terms of accuracy, flexibility and robustness.