NCJan 30
Recovering Whole-Brain Causal Connectivity under Indirect Observation with Applications to Human EEG and fMRISangyoon Bae, Miruna Oprescu, David Keetae Park et al.
Inferring directed connectivity from neuroimaging is an ill-posed inverse problem: recorded signals are distorted by hemodynamic filtering and volume conduction, which can mask true neural interactions. Many existing methods conflate these observation artifacts with genuine neural influence, risking spurious causal graphs driven by the measurement process. We introduce INCAMA (INdirect CAusal MAmba), a latent-space causal discovery framework that explicitly accounts for measurement physics to separate neural dynamics from indirect observations. INCAMA integrates a physics-aware inversion module with a nonstationarity-driven, delay-sensitive causal discovery model based on selective state-space sequences. Leveraging nonstationary mechanism shifts as soft interventions, we establish identifiability of delayed causal structure from indirect measurements and a stability bound that quantifies how inversion error affects graph recovery. We validate INCAMA on large-scale biophysical simulations across EEG and fMRI, where it significantly outperforms standard pipelines. We further demonstrate zero-shot generalization to real-world fMRI from the Human Connectome Project: without domain-specific fine-tuning, INCAMA recovers canonical visuo-motor pathways (e.g., $V1 \to V2$ and $M1 \leftrightarrow S1$) consistent with established neuroanatomy, supporting its use for whole-brain causal inference.
MLFeb 24
DANCE: Doubly Adaptive Neighborhood Conformal EstimationBrandon R. Feng, Brian J. Reich, Daniel Beaglehole et al.
The recent developments of complex deep learning models have led to unprecedented ability to accurately predict across multiple data representation types. Conformal prediction for uncertainty quantification of these models has risen in popularity, providing adaptive, statistically-valid prediction sets. For classification tasks, conformal methods have typically focused on utilizing logit scores. For pre-trained models, however, this can result in inefficient, overly conservative set sizes when not calibrated towards the target task. We propose DANCE, a doubly locally adaptive nearest-neighbor based conformal algorithm combining two novel nonconformity scores directly using the data's embedded representation. DANCE first fits a task-adaptive kernel regression model from the embedding layer before using the learned kernel space to produce the final prediction sets for uncertainty quantification. We test against state-of-the-art local, task-adapted and zero-shot conformal baselines, demonstrating DANCE's superior blend of set size efficiency and robustness across various datasets.
LGNov 4, 2025
OmniField: Conditioned Neural Fields for Robust Multimodal Spatiotemporal LearningKevin Valencia, Thilina Balasooriya, Xihaier Luo et al.
Multimodal spatiotemporal learning on real-world experimental data is constrained by two challenges: within-modality measurements are sparse, irregular, and noisy (QA/QC artifacts) but cross-modally correlated; the set of available modalities varies across space and time, shrinking the usable record unless models can adapt to arbitrary subsets at train and test time. We propose OmniField, a continuity-aware framework that learns a continuous neural field conditioned on available modalities and iteratively fuses cross-modal context. A multimodal crosstalk block architecture paired with iterative cross-modal refinement aligns signals prior to the decoder, enabling unified reconstruction, interpolation, forecasting, and cross-modal prediction without gridding or surrogate preprocessing. Extensive evaluations show that OmniField consistently outperforms eight strong multimodal spatiotemporal baselines. Under heavy simulated sensor noise, performance remains close to clean-input levels, highlighting robustness to corrupted measurements.
CVDec 24, 2018Code
Image-to-Image Translation via Group-wise Deep Whitening-and-Coloring TransformationWonwoong Cho, Sungha Choi, David Keetae Park et al.
Recently, unsupervised exemplar-based image-to-image translation, conditioned on a given exemplar without the paired data, has accomplished substantial advancements. In order to transfer the information from an exemplar to an input image, existing methods often use a normalization technique, e.g., adaptive instance normalization, that controls the channel-wise statistics of an input activation map at a particular layer, such as the mean and the variance. Meanwhile, style transfer approaches similar task to image translation by nature, demonstrated superior performance by using the higher-order statistics such as covariance among channels in representing a style. In detail, it works via whitening (given a zero-mean input feature, transforming its covariance matrix into the identity). followed by coloring (changing the covariance matrix of the whitened feature to those of the style feature). However, applying this approach in image translation is computationally intensive and error-prone due to the expensive time complexity and its non-trivial backpropagation. In response, this paper proposes an end-to-end approach tailored for image translation that efficiently approximates this transformation with our novel regularization methods. We further extend our approach to a group-wise form for memory and time efficiency as well as image quality. Extensive qualitative and quantitative experiments demonstrate that our proposed method is fast, both in training and inference, and highly effective in reflecting the style of an exemplar. Finally, our code is available at https://github.com/WonwoongCho/GDWCT.
LGDec 22, 2025
DIVER-1 : Deep Integration of Vast Electrophysiological Recordings at ScaleDanny Dongyeop Han, Yonghyeon Gwon, Ahhyun Lucy Lee et al.
Electrophysiology signals such as EEG and iEEG are central to neuroscience, brain-computer interfaces, and clinical applications, yet existing foundation models remain limited in scale despite clear evidence that scaling improves performance. We introduce DIVER-1, a family of EEG and iEEG foundation models trained on the largest and most diverse corpus to date-5.3k hours of iEEG and 54k hours of EEG (1.6M channel-hours from over 17.7k subjects)-and scaled up to 1.82B parameters. We present the first systematic scaling law analysis for this domain, showing that they follow data-constrained scaling laws: for a given amount of data and compute, smaller models trained for extended epochs consistently outperform larger models trained briefly. This behavior contrasts with prior electrophysiology foundation models that emphasized model size over training duration. To achieve strong performance, we also design architectural innovations including any-variate attention, sliding temporal conditional positional encoding, and multi-domain reconstruction. DIVER-1 iEEG and EEG models each achieve state-of-the-art performance on their respective benchmarks, establishing a concrete guidelines for efficient scaling and resource allocation in electrophysiology foundation model development.
LGApr 16, 2025
SCENT: Robust Spatiotemporal Learning for Continuous Scientific Data via Scalable Conditioned Neural FieldsDavid Keetae Park, Xihaier Luo, Guang Zhao et al.
Spatiotemporal learning is challenging due to the intricate interplay between spatial and temporal dependencies, the high dimensionality of the data, and scalability constraints. These challenges are further amplified in scientific domains, where data is often irregularly distributed (e.g., missing values from sensor failures) and high-volume (e.g., high-fidelity simulations), posing additional computational and modeling difficulties. In this paper, we present SCENT, a novel framework for scalable and continuity-informed spatiotemporal representation learning. SCENT unifies interpolation, reconstruction, and forecasting within a single architecture. Built on a transformer-based encoder-processor-decoder backbone, SCENT introduces learnable queries to enhance generalization and a query-wise cross-attention mechanism to effectively capture multi-scale dependencies. To ensure scalability in both data size and model complexity, we incorporate a sparse attention mechanism, enabling flexible output representations and efficient evaluation at arbitrary resolutions. We validate SCENT through extensive simulations and real-world experiments, demonstrating state-of-the-art performance across multiple challenging tasks while achieving superior scalability.
CVNov 28, 2025
Scalable Diffusion Transformer for Conditional 4D fMRI SynthesisJungwoo Seo, David Keetae Park, Shinjae Yoo et al.
Generating whole-brain 4D fMRI sequences conditioned on cognitive tasks remains challenging due to the high-dimensional, heterogeneous BOLD dynamics across subjects/acquisitions and the lack of neuroscience-grounded validation. We introduce the first diffusion transformer for voxelwise 4D fMRI conditional generation, combining 3D VQ-GAN latent compression with a CNN-Transformer backbone and strong task conditioning via AdaLN-Zero and cross-attention. On HCP task fMRI, our model reproduces task-evoked activation maps, preserves the inter-task representational structure observed in real data (RSA), achieves perfect condition specificity, and aligns ROI time-courses with canonical hemodynamic responses. Performance improves predictably with scale, reaching task-evoked map correlation of 0.83 and RSA of 0.98, consistently surpassing a U-Net baseline on all metrics. By coupling latent diffusion with a scalable backbone and strong conditioning, this work establishes a practical path to conditional 4D fMRI synthesis, paving the way for future applications such as virtual experiments, cross-site harmonization, and principled augmentation for downstream neuroimaging models.
SPJun 13, 2025
DIVER-0 : A Fully Channel Equivariant EEG Foundation ModelDanny Dongyeop Han, Ahhyun Lucy Lee, Taeyang Lee et al.
Electroencephalography (EEG) is a non-invasive technique widely used in brain-computer interfaces and clinical applications, yet existing EEG foundation models face limitations in modeling spatio-temporal brain dynamics and lack channel permutation equivariance, preventing robust generalization across diverse electrode configurations. To address these challenges, we propose DIVER-0, a novel EEG foundation model that demonstrates how full spatio-temporal attention-rather than segregated spatial or temporal processing-achieves superior performance when properly designed with Rotary Position Embedding (RoPE) for temporal relationships and binary attention biases for channel differentiation. We also introduce Sliding Temporal Conditional Positional Encoding (STCPE), which improves upon existing conditional positional encoding approaches by maintaining both temporal translation equivariance and channel permutation equivariance, enabling robust adaptation to arbitrary electrode configurations unseen during pretraining. Experimental results demonstrate that DIVER-0 achieves competitive performance with only 10% of pretraining data while maintaining consistent results across all channel permutation conditions, validating its effectiveness for cross-dataset generalization and establishing key design principles for handling the inherent heterogeneity of neural recording setups.
MLMay 27, 2025
STACI: Spatio-Temporal Aleatoric Conformal InferenceBrandon R. Feng, David Keetae Park, Xihaier Luo et al.
Fitting Gaussian Processes (GPs) provides interpretable aleatoric uncertainty quantification for estimation of spatio-temporal fields. Spatio-temporal deep learning models, while scalable, typically assume a simplistic independent covariance matrix for the response, failing to capture the underlying correlation structure. However, spatio-temporal GPs suffer from issues of scalability and various forms of approximation bias resulting from restrictive assumptions of the covariance kernel function. We propose STACI, a novel framework consisting of a variational Bayesian neural network approximation of non-stationary spatio-temporal GP along with a novel spatio-temporal conformal inference algorithm. STACI is highly scalable, taking advantage of GPU training capabilities for neural network models, and provides statistically valid prediction intervals for uncertainty quantification. STACI outperforms competing GPs and deep methods in accurately approximating spatio-temporal processes and we show it easily scales to datasets with millions of observations.
CLSep 20, 2020
F^2-Softmax: Diversifying Neural Text Generation via Frequency Factorized SoftmaxByung-Ju Choi, Jimin Hong, David Keetae Park et al.
Despite recent advances in neural text generation, encoding the rich diversity in human language remains elusive. We argue that the sub-optimal text generation is mainly attributable to the imbalanced token distribution, which particularly misdirects the learning model when trained with the maximum-likelihood objective. As a simple yet effective remedy, we propose two novel methods, F^2-Softmax and MefMax, for a balanced training even with the skewed frequency distribution. MefMax assigns tokens uniquely to frequency classes, trying to group tokens with similar frequencies and equalize frequency mass between the classes. F^2-Softmax then decomposes a probability distribution of the target token into a product of two conditional probabilities of (i) frequency class, and (ii) token from the target frequency class. Models learn more uniform probability distributions because they are confined to subsets of vocabularies. Significant performance gains on seven relevant metrics suggest the supremacy of our approach in improving not only the diversity but also the quality of generated texts.
CVJun 9, 2019
What and Where to Translate: Local Mask-based Image-to-Image TranslationWonwoong Cho, Seunghwan Choi, Junwoo Park et al.
Recently, image-to-image translation has obtained significant attention. Among many, those approaches based on an exemplar image that contains the target style information has been actively studied, due to its capability to handle multimodality as well as its applicability in practical use. However, two intrinsic problems exist in the existing methods: what and where to transfer. First, those methods extract style from an entire exemplar which includes noisy information, which impedes a translation model from properly extracting the intended style of the exemplar. That is, we need to carefully determine what to transfer from the exemplar. Second, the extracted style is applied to the entire input image, which causes unnecessary distortion in irrelevant image regions. In response, we need to decide where to transfer the extracted style. In this paper, we propose a novel approach that extracts out a local mask from the exemplar that determines what style to transfer, and another local mask from the input image that determines where to transfer the extracted style. The main novelty of this paper lies in (1) the highway adaptive instance normalization technique and (2) an end-to-end translation framework which achieves an outstanding performance in reflecting a style of an exemplar. We demonstrate the quantitative and qualitative evaluation results to confirm the advantages of our proposed approach.
AINov 13, 2018
Interpreting Models by Allowing to AskSungmin Kang, David Keetae Park, Jaehyuk Chang et al.
Questions convey information about the questioner, namely what one does not know. In this paper, we propose a novel approach to allow a learning agent to ask what it considers as tricky to predict, in the course of producing a final output. By analyzing when and what it asks, we can make our model more transparent and interpretable. We first develop this idea to propose a general framework of deep neural networks that can ask questions, which we call asking networks. A specific architecture and training process for an asking network is proposed for the task of colorization, which is an exemplar one-to-many task and thus a task where asking questions is helpful in performing the task accurately. Our results show that the model learns to generate meaningful questions, asks difficult questions first, and utilizes the provided hint more efficiently than baseline models. We conclude that the proposed asking framework makes the learning agent reveal its weaknesses, which poses a promising new direction in developing interpretable and interactive models.
CLJul 20, 2018
Question-Aware Sentence Gating Networks for Question and AnsweringMinjeong Kim, David Keetae Park, Hyungjong Noh et al.
Machine comprehension question answering, which finds an answer to the question given a passage, involves high-level reasoning processes of understanding and tracking the relevant contents across various semantic units such as words, phrases, and sentences in a document. This paper proposes the novel question-aware sentence gating networks that directly incorporate the sentence-level information into word-level encoding processes. To this end, our model first learns question-aware sentence representations and then dynamically combines them with word-level representations, resulting in semantically meaningful word representations for QA tasks. Experimental results demonstrate that our approach consistently improves the accuracy over existing baseline approaches on various QA datasets and bears the wide applicability to other neural network-based QA models.
CVMay 7, 2018
MEGAN: Mixture of Experts of Generative Adversarial Networks for Multimodal Image GenerationDavid Keetae Park, Seungjoo Yoo, Hyojin Bahng et al.
Recently, generative adversarial networks (GANs) have shown promising performance in generating realistic images. However, they often struggle in learning complex underlying modalities in a given dataset, resulting in poor-quality generated images. To mitigate this problem, we present a novel approach called mixture of experts GAN (MEGAN), an ensemble approach of multiple generator networks. Each generator network in MEGAN specializes in generating images with a particular subset of modalities, e.g., an image class. Instead of incorporating a separate step of handcrafted clustering of multiple modalities, our proposed model is trained through an end-to-end learning of multiple generators via gating networks, which is responsible for choosing the appropriate generator network for a given condition. We adopt the categorical reparameterization trick for a categorical decision to be made in selecting a generator while maintaining the flow of the gradients. We demonstrate that individual generators learn different and salient subparts of the data and achieve a multiscale structural similarity (MS-SSIM) score of 0.2470 for CelebA and a competitive unsupervised inception score of 8.33 in CIFAR-10.