Flavie Lavoie‐Cardinal

h-index19
2papers
1,288citations

2 Papers

3.0IVDec 8, 2023
Unmixing Optical Signals from Undersampled Volumetric Measurements by Filtering the Pixel Latent Variables

Catherine Bouchard, Andréanne Deschênes, Vincent Boulanger et al.

The development of signal unmixing algorithms is essential for leveraging multimodal datasets acquired through a wide array of scientific imaging technologies, including hyperspectral or time-resolved acquisitions. In experimental physics, enhancing the spatio-temporal resolution or expanding the number of detection channels often leads to diminished sampling rate and signal-to-noise ratio, significantly affecting the efficacy of signal unmixing algorithms. We propose Latent Unmixing, a new approach which applies bandpass filters to the latent space of a multidimensional convolutional neural network to disentangle overlapping signal components. It enables better isolation and quantification of individual signal contributions, especially in the context of undersampled distributions. Using multidimensional convolution kernels to process all dimensions simultaneously enhances the network's ability to extract information from adjacent pixels, and time or spectral bins. This approach enables more effective separation of components in cases where individual pixels do not provide clear, well-resolved information. We showcase the method's practical use in experimental physics through two test cases that highlight the versatility of our approach: fluorescence lifetime microscopy and mode decomposition in optical fibers. The latent unmixing method extracts valuable information from complex signals that cannot be resolved by standard methods. It opens up new possibilities in optics and photonics for multichannel separation at an increased sampling rate.

0.9CVMar 28, 2018
Learning to Become an Expert: Deep Networks Applied To Super-Resolution Microscopy

Louis-Émile Robitaille, Audrey Durand, Marc-André Gardner et al.

With super-resolution optical microscopy, it is now possible to observe molecular interactions in living cells. The obtained images have a very high spatial precision but their overall quality can vary a lot depending on the structure of interest and the imaging parameters. Moreover, evaluating this quality is often difficult for non-expert users. In this work, we tackle the problem of learning the quality function of super- resolution images from scores provided by experts. More specifically, we are proposing a system based on a deep neural network that can provide a quantitative quality measure of a STED image of neuronal structures given as input. We conduct a user study in order to evaluate the quality of the predictions of the neural network against those of a human expert. Results show the potential while highlighting some of the limits of the proposed approach.