Yupei Zhang

Yupei Zhang, Xianjin Dai, Zhen Tian et al.

This study proposed a deep learning-based tracking method for ultrasound (US) image-guided radiation therapy. The proposed cascade deep learning model is composed of an attention network, a mask region-based convolutional neural network (mask R-CNN), and a long short-term memory (LSTM) network. The attention network learns a mapping from a US image to a suspected area of landmark motion in order to reduce the search region. The mask R-CNN then produces multiple region-of-interest (ROI) proposals in the reduced region and identifies the proposed landmark via three network heads: bounding box regression, proposal classification, and landmark segmentation. The LSTM network models the temporal relationship among the successive image frames for bounding box regression and proposal classification. To consolidate the final proposal, a selection method is designed according to the similarities between sequential frames. The proposed method was tested on the liver US tracking datasets used in the Medical Image Computing and Computer Assisted Interventions (MICCAI) 2015 challenges, where the landmarks were annotated by three experienced observers to obtain their mean positions. Five-fold cross-validation on the 24 given US sequences with ground truths shows that the mean tracking error for all landmarks is 0.65+/-0.56 mm, and the errors of all landmarks are within 2 mm. We further tested the proposed model on 69 landmarks from the testing dataset that has a similar image pattern to the training pattern, resulting in a mean tracking error of 0.94+/-0.83 mm. Our experimental results have demonstrated the feasibility and accuracy of our proposed method in tracking liver anatomic landmarks using US images, providing a potential solution for real-time liver tracking for active motion management during radiation therapy.

Xiaofei Wang, Hanyu Liu, Yupei Zhang et al.

Cancers are characterized by remarkable heterogeneity and diverse prognosis. Accurate cancer classification is essential for patient stratification and clinical decision-making. Although digital pathology has been advancing cancer diagnosis and prognosis, the paradigm in cancer pathology has shifted from purely relying on histology features to incorporating molecular markers. There is an urgent need for digital pathology methods to meet the needs of the new paradigm. We introduce a novel digital pathology approach to jointly predict molecular markers and histology features and model their interactions for cancer classification. Firstly, to mitigate the challenge of cross-magnification information propagation, we propose a multi-scale disentangling module, enabling the extraction of multi-scale features from high-magnification (cellular-level) to low-magnification (tissue-level) whole slide images. Further, based on the multi-scale features, we propose an attention-based hierarchical multi-task multi-instance learning framework to simultaneously predict histology and molecular markers. Moreover, we propose a co-occurrence probability-based label correlation graph network to model the co-occurrence of molecular markers. Lastly, we design a cross-modal interaction module with the dynamic confidence constrain loss and a cross-modal gradient modulation strategy, to model the interactions of histology and molecular markers. Our experiments demonstrate that our method outperforms other state-of-the-art methods in classifying glioma, histology features and molecular markers. Our method promises to promote precise oncology with the potential to advance biomedical research and clinical applications. The code is available at https://github.com/LHY1007/M3C2

Yupei Zhang, Yuxin Li, Yifei Wang et al.

Learning-outcome prediction (LOP) is a long-standing and critical problem in educational routes. Many studies have contributed to developing effective models while often suffering from data shortage and low generalization to various institutions due to the privacy-protection issue. To this end, this study proposes a distributed grade prediction model, dubbed FecMap, by exploiting the federated learning (FL) framework that preserves the private data of local clients and communicates with others through a global generalized model. FecMap considers local subspace learning (LSL), which explicitly learns the local features against the global features, and multi-layer privacy protection (MPP), which hierarchically protects the private features, including model-shareable features and not-allowably shared features, to achieve client-specific classifiers of high performance on LOP per institution. FecMap is then achieved in an iteration manner with all datasets distributed on clients by training a local neural network composed of a global part, a local part, and a classification head in clients and averaging the global parts from clients on the server. To evaluate the FecMap model, we collected three higher-educational datasets of student academic records from engineering majors. Experiment results manifest that FecMap benefits from the proposed LSL and MPP and achieves steady performance on the task of LOP, compared with the state-of-the-art models. This study makes a fresh attempt at the use of federated learning in the learning-analytical task, potentially paving the way to facilitating personalized education with privacy protection.

Xiran Qu, Xuequn Shang, Yupei Zhang

This paper studies the problem of CPRP, concept prerequisite relation prediction, which is a fundamental task in using AI for education. CPRP is usually formulated into a link-prediction task on a relationship graph of concepts and solved by training the graph neural network (GNN) model. However, current directed GNNs fail to manage graph isomorphism which refers to the invariance of non-isomorphic graphs, reducing the expressivity of resulting representations. We present a permutation-equivariant directed GNN model by introducing the Weisfeiler-Lehman test into directed GNN learning. Our method is then used for CPRP and evaluated on three public datasets. The experimental results show that our model delivers better prediction performance than the state-of-the-art methods.

Zhiguang Wu, Fengbin Zhu, Xuequn Shang et al.

Text-to-SQL task aims to automatically yield SQL queries according to user text questions. To address this problem, we propose a Cooperative SQL Generation framework based on Multi-functional Agents (CSMA) through information interaction among large language model (LLM) based agents who own part of the database schema seperately. Inspired by the collaboration in human teamwork, CSMA consists of three stages: 1) Question-related schema collection, 2) Question-corresponding SQL query generation, and 3) SQL query correctness check. In the first stage, agents analyze their respective schema and communicate with each other to collect the schema information relevant to the question. In the second stage, agents try to generate the corresponding SQL query for the question using the collected information. In the third stage, agents check if the SQL query is created correctly according to their known information. This interaction-based method makes the question-relevant part of database schema from each agent to be used for SQL generation and check. Experiments on the Spider and Bird benckmark demonstrate that CSMA achieves a high performance level comparable to the state-of-the-arts, meanwhile holding the private data in these individual agents.

Yupei Zhang, Ruojia Feng, Yifei Wang et al.

This paper introduces FDSC, a private-protected subspace clustering (SC) approach with federated learning (FC) schema. In each client, there is a deep subspace clustering network accounting for grouping the isolated data, composed of a encode network, a self-expressive layer, and a decode network. FDSC is achieved by uploading the encode network to communicate with other clients in the server. Besides, FDSC is also enhanced by preserving the local neighborhood relationship in each client. With the effects of federated learning and locality preservation, the learned data features from the encoder are boosted so as to enhance the self-expressiveness learning and result in better clustering performance. Experiments test FDSC on public datasets and compare with other clustering methods, demonstrating the effectiveness of FDSC.

Yupei Zhang, Kwok-Leung Chan

To detect saliency in video is a fundamental step in many computer vision systems. Saliency is the significant target(s) in the video. The object of interest is further analyzed for high-level applications. The segregation of saliency and the background can be made if they exhibit different visual cues. Therefore, saliency detection is often formulated as background subtraction. However, saliency detection is challenging. For instance, dynamic background can result in false positive errors. In another scenario, camouflage will lead to false negative errors. With moving camera, the captured scenes are even more complicated to handle. We propose a new framework, called saliency detection via background model completion (SD-BMC), that comprises of a background modeler and the deep learning background/foreground segmentation network. The background modeler generates an initial clean background image from a short image sequence. Based on the idea of video completion, a good background frame can be synthesized with the co-existence of changing background and moving objects. We adopt the background/foreground segmenter, although pre-trained with a specific video dataset, can also detect saliency in unseen videos. The background modeler can adjust the background image dynamically when the background/foreground segmenter output deteriorates during processing of a long video. To the best of our knowledge, our framework is the first one to adopt video completion for background modeling and saliency detection in videos captured by moving camera. The results, obtained from the PTZ videos, show that our proposed framework outperforms some deep learning-based background subtraction models by 11% or more. With more challenging videos, our framework also outperforms many high ranking background subtraction methods by more than 3%.