Werner Nahm

Denis Krnjaca, Lorena Krames, Werner Nahm

Anatomical landmark segmentation serves as a critical initial step for robust multimodal registration during computer-assisted interventions. Current approaches predominantly rely on deep learning, which often necessitates the extensive manual generation of annotated datasets. In this paper, we present a novel strategy for creating large annotated datasets using a statistical shape model (SSM) based on a mean shape that is manually labeled only once. We demonstrate the method's efficacy through its application to deep-learning-based anatomical landmark segmentation, specifically targeting the detection of the anterior ridge and the falciform ligament in 3D liver shapes. A specialized deep learning network was trained with 8,800 annotated liver shapes generated by the SSM. The network's performance was evaluated on 500 unseen synthetic SSM shapes, yielding a mean Intersection over Union of 91.4% (87.4% for the anterior ridge and 87.6% for the falciform ligament). Subsequently, the network was applied to clinical patient liver shapes, with qualitative evaluation indicating promising results and highlighting the generalizability of the proposed approach. Our findings suggest that the SSM-based data generation approach alleviates the labor-intensive process of manual labeling while enabling the creation of large annotated training datasets for machine learning. Although our study focuses on liver anatomy, the proposed methodology holds potential for a broad range of applications where annotated training datasets play a pivotal role in developing accurate deep-learning models.

Matthias Schaufelberger, Reinald Peter Kühle, Andreas Wachter et al.

The assessment of craniofacial deformities requires patient data which is sparsely available. Statistical shape models provide realistic and synthetic data enabling comparisons of existing methods on a common dataset. We build the first publicly available statistical 3D head model of craniosynostosis patients and the first model focusing on infants younger than 1.5 years. We further present a shape-model-based classification pipeline to distinguish between three different classes of craniosynostosis and a control group on photogrammetric surface scans. To the best of our knowledge, our study uses the largest dataset of craniosynostosis patients in a classification study for craniosynostosis and statistical shape modeling to date. We demonstrate that our shape model performs similar to other statistical shape models of the human head. Craniosynostosis-specific pathologies are represented in the first eigenmodes of the model. Regarding the automatic classification of craniosynostis, our classification approach yields an accuracy of 97.8%, comparable to other state-of-the-art methods using both computed tomography scans and stereophotogrammetry. Our publicly available, craniosynostosis-specific statistical shape model enables the assessment of craniosynostosis on realistic and synthetic data. We further present a state-of-the-art shape-model-based classification approach for a radiation-free diagnosis of craniosynostosis.

Andreas Wachter, Werner Nahm

Supervised training of neural networks requires large, diverse and well annotated data sets. In the medical field, this is often difficult to achieve due to constraints in time, expert knowledge and prevalence of an event. Artificial data augmentation can help to prevent overfitting and improve the detection of rare events as well as overall performance. However, most augmentation techniques use purely spatial transformations, which are not sufficient for video data with temporal correlations. In this paper, we present a novel methodology for workflow augmentation and demonstrate its benefit for event recognition in cataract surgery. The proposed approach increases the frequency of event alternation by creating artificial videos. The original video is split into event segments and a workflow graph is extracted from the original annotations. Finally, the segments are assembled into new videos based on the workflow graph. Compared to the original videos, the frequency of event alternation in the augmented cataract surgery videos increased by 26%. Further, a 3% higher classification accuracy and a 7.8% higher precision was achieved compared to a state-of-the-art approach. Our approach is particularly helpful to increase the occurrence of rare but important events and can be applied to a large variety of use cases.