Bradley Malin

LG
h-index19
23papers
927citations
Novelty44%
AI Score49

23 Papers

CRJun 17, 2022
A Roadmap for Greater Public Use of Privacy-Sensitive Government Data: Workshop Report

Chris Clifton, Bradley Malin, Anna Oganian et al.

Government agencies collect and manage a wide range of ever-growing datasets. While such data has the potential to support research and evidence-based policy making, there are concerns that the dissemination of such data could infringe upon the privacy of the individuals (or organizations) from whom such data was collected. To appraise the current state of data sharing, as well as learn about opportunities for stimulating such sharing at a faster pace, a virtual workshop was held on May 21st and 26th, 2021, sponsored by the National Science Foundation (NSF) and National Institute of Standards and Technologies (NIST), and the White House Office of Science and Technology Policy (OSTP), where a multinational collection of researchers and practitioners were brought together to discuss their experiences and learn about recently developed technologies for managing privacy while sharing data. The workshop specifically focused on challenges and successes in government data sharing at various levels. The first day focused on successful examples of new technology applied to sharing of public data, including formal privacy techniques, synthetic data, and cryptographic approaches. Day two emphasized brainstorming sessions on some of the challenges and directions to address them.

LGAug 29, 2024
Analyzing Inference Privacy Risks Through Gradients in Machine Learning

Zhuohang Li, Andrew Lowy, Jing Liu et al.

In distributed learning settings, models are iteratively updated with shared gradients computed from potentially sensitive user data. While previous work has studied various privacy risks of sharing gradients, our paper aims to provide a systematic approach to analyze private information leakage from gradients. We present a unified game-based framework that encompasses a broad range of attacks including attribute, property, distributional, and user disclosures. We investigate how different uncertainties of the adversary affect their inferential power via extensive experiments on five datasets across various data modalities. Our results demonstrate the inefficacy of solely relying on data aggregation to achieve privacy against inference attacks in distributed learning. We further evaluate five types of defenses, namely, gradient pruning, signed gradient descent, adversarial perturbations, variational information bottleneck, and differential privacy, under both static and adaptive adversary settings. We provide an information-theoretic view for analyzing the effectiveness of these defenses against inference from gradients. Finally, we introduce a method for auditing attribute inference privacy, improving the empirical estimation of worst-case privacy through crafting adversarial canary records.

LGAug 2, 2024
Adaptive Recruitment Resource Allocation to Improve Cohort Representativeness in Participatory Biomedical Datasets

Victor Borza, Andrew Estornell, Ellen Wright Clayton et al.

Large participatory biomedical studies, studies that recruit individuals to join a dataset, are gaining popularity and investment, especially for analysis by modern AI methods. Because they purposively recruit participants, these studies are uniquely able to address a lack of historical representation, an issue that has affected many biomedical datasets. In this work, we define representativeness as the similarity to a target population distribution of a set of attributes and our goal is to mirror the U.S. population across distributions of age, gender, race, and ethnicity. Many participatory studies recruit at several institutions, so we introduce a computational approach to adaptively allocate recruitment resources among sites to improve representativeness. In simulated recruitment of 10,000-participant cohorts from medical centers in the STAR Clinical Research Network, we show that our approach yields a more representative cohort than existing baselines. Thus, we highlight the value of computational modeling in guiding recruitment efforts.

LGSep 11, 2024
Exploring User-level Gradient Inversion with a Diffusion Prior

Zhuohang Li, Andrew Lowy, Jing Liu et al.

We explore user-level gradient inversion as a new attack surface in distributed learning. We first investigate existing attacks on their ability to make inferences about private information beyond training data reconstruction. Motivated by the low reconstruction quality of existing methods, we propose a novel gradient inversion attack that applies a denoising diffusion model as a strong image prior in order to enhance recovery in the large batch setting. Unlike traditional attacks, which aim to reconstruct individual samples and suffer at large batch and image sizes, our approach instead aims to recover a representative image that captures the sensitive shared semantic information corresponding to the underlying user. Our experiments with face images demonstrate the ability of our methods to recover realistic facial images along with private user attributes.

LGJul 6, 2022
Distillation to Enhance the Portability of Risk Models Across Institutions with Large Patient Claims Database

Steve Nyemba, Chao Yan, Ziqi Zhang et al.

Artificial intelligence, and particularly machine learning (ML), is increasingly developed and deployed to support healthcare in a variety of settings. However, clinical decision support (CDS) technologies based on ML need to be portable if they are to be adopted on a broad scale. In this respect, models developed at one institution should be reusable at another. Yet there are numerous examples of portability failure, particularly due to naive application of ML models. Portability failure can lead to suboptimal care and medical errors, which ultimately could prevent the adoption of ML-based CDS in practice. One specific healthcare challenge that could benefit from enhanced portability is the prediction of 30-day readmission risk. Research to date has shown that deep learning models can be effective at modeling such risk. In this work, we investigate the practicality of model portability through a cross-site evaluation of readmission prediction models. To do so, we apply a recurrent neural network, augmented with self-attention and blended with expert features, to build readmission prediction models for two independent large scale claims datasets. We further present a novel transfer learning technique that adapts the well-known method of born-again network (BAN) training. Our experiments show that direct application of ML models trained at one institution and tested at another institution perform worse than models trained and tested at the same institution. We further show that the transfer learning approach based on the BAN produces models that are better than those trained on just a single institution's data. Notably, this improvement is consistent across both sites and occurs after a single retraining, which illustrates the potential for a cheap and general model transfer mechanism of readmission risk prediction.

AIJan 22
From Passive Metric to Active Signal: The Evolving Role of Uncertainty Quantification in Large Language Models

Jiaxin Zhang, Wendi Cui, Zhuohang Li et al.

While Large Language Models (LLMs) show remarkable capabilities, their unreliability remains a critical barrier to deployment in high-stakes domains. This survey charts a functional evolution in addressing this challenge: the evolution of uncertainty from a passive diagnostic metric to an active control signal guiding real-time model behavior. We demonstrate how uncertainty is leveraged as an active control signal across three frontiers: in \textbf{advanced reasoning} to optimize computation and trigger self-correction; in \textbf{autonomous agents} to govern metacognitive decisions about tool use and information seeking; and in \textbf{reinforcement learning} to mitigate reward hacking and enable self-improvement via intrinsic rewards. By grounding these advancements in emerging theoretical frameworks like Bayesian methods and Conformal Prediction, we provide a unified perspective on this transformative trend. This survey provides a comprehensive overview, critical analysis, and practical design patterns, arguing that mastering the new trend of uncertainty is essential for building the next generation of scalable, reliable, and trustworthy AI.

CLMar 17
Learning When to Sample: Confidence-Aware Self-Consistency for Efficient LLM Chain-of-Thought Reasoning

Juming Xiong, Kevin Guo, Congning Ni et al.

Large language models (LLMs) achieve strong reasoning performance through chain-of-thought (CoT) reasoning, yet often generate unnecessarily long reasoning paths that incur high inference cost. Recent self-consistency-based approaches further improve accuracy but require sampling and aggregating multiple reasoning trajectories, leading to substantial additional computational overhead. This paper introduces a confidence-aware decision framework that analyzes a single completed reasoning trajectory to adaptively select between single-path and multi-path reasoning. The framework is trained using sentence-level numeric and linguistic features extracted from intermediate reasoning states in the MedQA dataset and generalizes effectively to MathQA, MedMCQA, and MMLU without additional fine-tuning. Experimental results show that the proposed method maintains accuracy comparable to multi-path baselines while using up to 80\% fewer tokens. These findings demonstrate that reasoning trajectories contain rich signals for uncertainty estimation, enabling a simple, transferable mechanism to balance accuracy and efficiency in LLM reasoning.

CLFeb 17, 2024
SEE: Strategic Exploration and Exploitation for Cohesive In-Context Prompt Optimization

Wendi Cui, Zhuohang Li, Hao Sun et al.

Designing optimal prompts for Large Language Models (LLMs) is a complicated and resource-intensive task, often requiring substantial human expertise and effort. Existing approaches typically separate the optimization of prompt instructions and in-context learning examples, leading to incohesive prompts that are defined and represented by suboptimal task performance. To overcome these challenges, we propose a novel Cohesive In-Context Prompt Optimization framework that refines both prompt instructions and examples. However, formulating such an optimization in the discrete and high-dimensional space of natural language poses significant challenges in both convergence and computational efficiency. To address these issues, we introduce SEE, a scalable and efficient prompt optimization framework that adopts metaheuristic optimization principles and strategically balances exploration and exploitation to enhance optimization performance and achieve efficient convergence. SEE features a quad-phased design that alternates between global traversal (exploration) and local optimization (exploitation) and adaptively chooses LLM operators during the optimization process. We have conducted a comprehensive evaluation across 35 benchmark tasks, and SEE significantly outperforms state-of-the-art baseline methods by a large margin, achieving an average performance gain of 13.94 while reducing computational costs by 58.67.

CRMar 6, 2025
A Consensus Privacy Metrics Framework for Synthetic Data

Lisa Pilgram, Fida K. Dankar, Jorg Drechsler et al.

Synthetic data generation is one approach for sharing individual-level data. However, to meet legislative requirements, it is necessary to demonstrate that the individuals' privacy is adequately protected. There is no consolidated standard for measuring privacy in synthetic data. Through an expert panel and consensus process, we developed a framework for evaluating privacy in synthetic data. Our findings indicate that current similarity metrics fail to measure identity disclosure, and their use is discouraged. For differentially private synthetic data, a privacy budget other than close to zero was not considered interpretable. There was consensus on the importance of membership and attribute disclosure, both of which involve inferring personal information about an individual without necessarily revealing their identity. The resultant framework provides precise recommendations for metrics that address these types of disclosures effectively. Our findings further present specific opportunities for future research that can help with widespread adoption of synthetic data.

CLJan 4, 2024
DCR-Consistency: Divide-Conquer-Reasoning for Consistency Evaluation and Improvement of Large Language Models

Wendi Cui, Jiaxin Zhang, Zhuohang Li et al.

Evaluating the quality and variability of text generated by Large Language Models (LLMs) poses a significant, yet unresolved research challenge. Traditional evaluation methods, such as ROUGE and BERTScore, which measure token similarity, often fail to capture the holistic semantic equivalence. This results in a low correlation with human judgments and intuition, which is especially problematic in high-stakes applications like healthcare and finance where reliability, safety, and robust decision-making are highly critical. This work proposes DCR, an automated framework for evaluating and improving the consistency of LLM-generated texts using a divide-conquer-reasoning approach. Unlike existing LLM-based evaluators that operate at the paragraph level, our method employs a divide-and-conquer evaluator (DCE) that breaks down the paragraph-to-paragraph comparison between two generated responses into individual sentence-to-paragraph comparisons, each evaluated based on predefined criteria. To facilitate this approach, we introduce an automatic metric converter (AMC) that translates the output from DCE into an interpretable numeric score. Beyond the consistency evaluation, we further present a reason-assisted improver (RAI) that leverages the analytical reasons with explanations identified by DCE to generate new responses aimed at reducing these inconsistencies. Through comprehensive and systematic empirical analysis, we show that our approach outperforms state-of-the-art methods by a large margin (e.g., +19.3% and +24.3% on the SummEval dataset) in evaluating the consistency of LLM generation across multiple benchmarks in semantic, factual, and summarization consistency tasks. Our approach also substantially reduces nearly 90% of output inconsistencies, showing promise for effective hallucination mitigation.

LGJun 2, 2025
SMOTE-DP: Improving Privacy-Utility Tradeoff with Synthetic Data

Yan Zhou, Bradley Malin, Murat Kantarcioglu

Privacy-preserving data publication, including synthetic data sharing, often experiences trade-offs between privacy and utility. Synthetic data is generally more effective than data anonymization in balancing this trade-off, however, not without its own challenges. Synthetic data produced by generative models trained on source data may inadvertently reveal information about outliers. Techniques specifically designed for preserving privacy, such as introducing noise to satisfy differential privacy, often incur unpredictable and significant losses in utility. In this work we show that, with the right mechanism of synthetic data generation, we can achieve strong privacy protection without significant utility loss. Synthetic data generators producing contracting data patterns, such as Synthetic Minority Over-sampling Technique (SMOTE), can enhance a differentially private data generator, leveraging the strengths of both. We prove in theory and through empirical demonstration that this SMOTE-DP technique can produce synthetic data that not only ensures robust privacy protection but maintains utility in downstream learning tasks.

CLMar 13, 2025
SCE: Scalable Consistency Ensembles Make Blackbox Large Language Model Generation More Reliable

Jiaxin Zhang, Zhuohang Li, Wendi Cui et al.

Large language models (LLMs) have demonstrated remarkable performance, yet their diverse strengths and weaknesses prevent any single LLM from achieving dominance across all tasks. Ensembling multiple LLMs is a promising approach to generate reliable responses but conventional ensembling frameworks suffer from high computational overheads. This work introduces Scalable Consistency Ensemble (SCE), an efficient framework for ensembling LLMs by prompting consistent outputs. The SCE framework systematically evaluates and integrates outputs to produce a cohesive result through two core components: SCE-CHECK, a mechanism that gauges the consistency between response pairs via semantic equivalence; and SCE-FUSION, which adeptly merges the highest-ranked consistent responses from SCE-CHECK, to optimize collective strengths and mitigating potential weaknesses. To improve the scalability with multiple inference queries, we further propose ``{You Only Prompt Once}'' (YOPO), a novel technique that reduces the inference complexity of pairwise comparison from quadratic to constant time. We perform extensive empirical evaluations on diverse benchmark datasets to demonstrate \methodName's effectiveness. Notably, the \saccheckcomponent outperforms conventional baselines with enhanced performance and a significant reduction in computational overhead.

LGJan 10, 2025
Scale-up Unlearnable Examples Learning with High-Performance Computing

Yanfan Zhu, Issac Lyngaas, Murali Gopalakrishnan Meena et al.

Recent advancements in AI models are structured to retain user interactions, which could inadvertently include sensitive healthcare data. In the healthcare field, particularly when radiologists use AI-driven diagnostic tools hosted on online platforms, there is a risk that medical imaging data may be repurposed for future AI training without explicit consent, spotlighting critical privacy and intellectual property concerns around healthcare data usage. Addressing these privacy challenges, a novel approach known as Unlearnable Examples (UEs) has been introduced, aiming to make data unlearnable to deep learning models. A prominent method within this area, called Unlearnable Clustering (UC), has shown improved UE performance with larger batch sizes but was previously limited by computational resources. To push the boundaries of UE performance with theoretically unlimited resources, we scaled up UC learning across various datasets using Distributed Data Parallel (DDP) training on the Summit supercomputer. Our goal was to examine UE efficacy at high-performance computing (HPC) levels to prevent unauthorized learning and enhance data security, particularly exploring the impact of batch size on UE's unlearnability. Utilizing the robust computational capabilities of the Summit, extensive experiments were conducted on diverse datasets such as Pets, MedMNist, Flowers, and Flowers102. Our findings reveal that both overly large and overly small batch sizes can lead to performance instability and affect accuracy. However, the relationship between batch size and unlearnability varied across datasets, highlighting the necessity for tailored batch size strategies to achieve optimal data protection. Our results underscore the critical role of selecting appropriate batch sizes based on the specific characteristics of each dataset to prevent learning and ensure data security in deep learning applications.

CLMar 10
Disentangling Prompt Element Level Risk Factors for Hallucinations and Omissions in Mental Health LLM Responses

Congning Ni, Sarvech Qadir, Bryan Steitz et al.

Mental health concerns are often expressed outside clinical settings, including in high-distress help seeking, where safety-critical guidance may be needed. Consumer health informatics systems increasingly incorporate large language models (LLMs) for mental health question answering, yet many evaluations underrepresent narrative, high-distress inquiries. We introduce UTCO (User, Topic, Context, Tone), a prompt construction framework that represents an inquiry as four controllable elements for systematic stress testing. Using 2,075 UTCO-generated prompts, we evaluated Llama 3.3 and annotated hallucinations (fabricated or incorrect clinical content) and omissions (missing clinically necessary or safety-critical guidance). Hallucinations occurred in 6.5% of responses and omissions in 13.2%, with omissions concentrated in crisis and suicidal ideation prompts. Across regression, element-specific matching, and similarity-matched comparisons, failures were most consistently associated with context and tone, while user-background indicators showed no systematic differences after balancing. These findings support evaluating omissions as a primary safety outcome and moving beyond static benchmark question sets.

LGJun 28, 2024
Dataset Representativeness and Downstream Task Fairness

Victor Borza, Andrew Estornell, Chien-Ju Ho et al.

Our society collects data on people for a wide range of applications, from building a census for policy evaluation to running meaningful clinical trials. To collect data, we typically sample individuals with the goal of accurately representing a population of interest. However, current sampling processes often collect data opportunistically from data sources, which can lead to datasets that are biased and not representative, i.e., the collected dataset does not accurately reflect the distribution of demographics of the true population. This is a concern because subgroups within the population can be under- or over-represented in a dataset, which may harm generalizability and lead to an unequal distribution of benefits and harms from downstream tasks that use such datasets (e.g., algorithmic bias in medical decision-making algorithms). In this paper, we assess the relationship between dataset representativeness and group-fairness of classifiers trained on that dataset. We demonstrate that there is a natural tension between dataset representativeness and classifier fairness; empirically we observe that training datasets with better representativeness can frequently result in classifiers with higher rates of unfairness. We provide some intuition as to why this occurs via a set of theoretical results in the case of univariate classifiers. We also find that over-sampling underrepresented groups can result in classifiers which exhibit greater bias to those groups. Lastly, we observe that fairness-aware sampling strategies (i.e., those which are specifically designed to select data with high downstream fairness) will often over-sample members of majority groups. These results demonstrate that the relationship between dataset representativeness and downstream classifier fairness is complex; balancing these two quantities requires special care from both model- and dataset-designers.

LGDec 18, 2020
EVA: Generating Longitudinal Electronic Health Records Using Conditional Variational Autoencoders

Siddharth Biswal, Soumya Ghosh, Jon Duke et al.

Researchers require timely access to real-world longitudinal electronic health records (EHR) to develop, test, validate, and implement machine learning solutions that improve the quality and efficiency of healthcare. In contrast, health systems value deeply patient privacy and data security. De-identified EHRs do not adequately address the needs of health systems, as de-identified data are susceptible to re-identification and its volume is also limited. Synthetic EHRs offer a potential solution. In this paper, we propose EHR Variational Autoencoder (EVA) for synthesizing sequences of discrete EHR encounters (e.g., clinical visits) and encounter features (e.g., diagnoses, medications, procedures). We illustrate that EVA can produce realistic EHR sequences, account for individual differences among patients, and can be conditioned on specific disease conditions, thus enabling disease-specific studies. We design efficient, accurate inference algorithms by combining stochastic gradient Markov Chain Monte Carlo with amortized variational inference. We assess the utility of the methods on large real-world EHR repositories containing over 250, 000 patients. Our experiments, which include user studies with knowledgeable clinicians, indicate the generated EHR sequences are realistic. We confirmed the performance of predictive models trained on the synthetic data are similar with those trained on real EHRs. Additionally, our findings indicate that augmenting real data with synthetic EHRs results in the best predictive performance - improving the best baseline by as much as 8% in top-20 recall.

CROct 17, 2020
GOAT: GPU Outsourcing of Deep Learning Training With Asynchronous Probabilistic Integrity Verification Inside Trusted Execution Environment

Aref Asvadishirehjini, Murat Kantarcioglu, Bradley Malin

Machine learning models based on Deep Neural Networks (DNNs) are increasingly deployed in a wide range of applications ranging from self-driving cars to COVID-19 treatment discovery. To support the computational power necessary to learn a DNN, cloud environments with dedicated hardware support have emerged as critical infrastructure. However, there are many integrity challenges associated with outsourcing computation. Various approaches have been developed to address these challenges, building on trusted execution environments (TEE). Yet, no existing approach scales up to support realistic integrity-preserving DNN model training for heavy workloads (deep architectures and millions of training examples) without sustaining a significant performance hit. To mitigate the time gap between pure TEE (full integrity) and pure GPU (no integrity), we combine random verification of selected computation steps with systematic adjustments of DNN hyper-parameters (e.g., a narrow gradient clipping range), hence limiting the attacker's ability to shift the model parameters significantly provided that the step is not selected for verification during its training phase. Experimental results show the new approach achieves 2X to 20X performance improvement over pure TEE based solution while guaranteeing a very high probability of integrity (e.g., 0.999) with respect to state-of-the-art DNN backdoor attacks.

DBJan 13, 2020
Leveraging Blockchain for Immutable Logging and Querying Across Multiple Sites

Mustafa Safa Ozdayi, Murat Kantarcioglu, Bradley Malin

Blockchain has emerged as a decentralized and distributed framework that enables tamper-resilience and, thus, practical immutability for stored data. This immutability property is important in scenarios where auditability is desired, such as in maintaining access logs for sensitive healthcare and biomedical data.However, the underlying data structure of blockchain, by default, does not provide capabilities to efficiently query the stored data. In this investigation, we show that it is possible to efficiently run complex audit queries over the access log data stored on blockchains by using additional key-value stores. This paper specifically reports on the approach we designed for the blockchain track of iDASH Privacy & Security Workshop 2018 competition.Particularly, we implemented our solution and compared its loading and query-response performance with SQLite, a commonly used relational database, using the data provided by the iDASH 2018 organizers. Depending on the query type and the data size, the run time difference between blockchain based query-response and SQLite based query-response ranged from 0.2 seconds to 6 seconds. A deeper inspection revealed that range queries were the bottleneck of our solution which, nevertheless, scales up linearly. Concretely, this investigation demonstrates that blockchain-based systems can provide reasonable query-response times to complex queries even if they only use simple key-value stores to manage their data. Consequently, we show that blockchains may be useful for maintaining data with auditability and immutability requirements across multiple sites.

CRMay 16, 2019
To Warn or Not to Warn: Online Signaling in Audit Games

Chao Yan, Haifeng Xu, Yevgeniy Vorobeychik et al.

Routine operational use of sensitive data is often governed by law and regulation. For instance, in the medical domain, there are various statues at the state and federal level that dictate who is permitted to work with patients' records and under what conditions. To screen for potential privacy breaches, logging systems are usually deployed to trigger alerts whenever suspicious access is detected. However, such mechanisms are often inefficient because 1) the vast majority of triggered alerts are false positives, 2) small budgets make it unlikely that a real attack will be detected, and 3) attackers can behave strategically, such that traditional auditing mechanisms cannot easily catch them. To improve efficiency, information systems may invoke signaling, so that whenever a suspicious access request occurs, the system can, in real time, warn the user that the access may be audited. Then, at the close of a finite period, a selected subset of suspicious accesses are audited. This gives rise to an online problem in which one needs to determine 1) whether a warning should be triggered and 2) the likelihood that the data request event will be audited. In this paper, we formalize this auditing problem as a Signaling Audit Game (SAG), in which we model the interactions between an auditor and an attacker in the context of signaling and the usability cost is represented as a factor of the auditor's payoff. We study the properties of its Stackelberg equilibria and develop a scalable approach to compute its solution. We show that a strategic presentation of warnings adds value in that SAGs realize significantly higher utility for the auditor than systems without signaling. We illustrate the value of the proposed auditing model and the consistency of its advantages over existing baseline methods.

AIJan 22, 2018
Get Your Workload in Order: Game Theoretic Prioritization of Database Auditing

Chao Yan, Bo Li, Yevgeniy Vorobeychik et al.

For enhancing the privacy protections of databases, where the increasing amount of detailed personal data is stored and processed, multiple mechanisms have been developed, such as audit logging and alert triggers, which notify administrators about suspicious activities; however, the two main limitations in common are: 1) the volume of such alerts is often substantially greater than the capabilities of resource-constrained organizations, and 2) strategic attackers may disguise their actions or carefully choosing which records they touch, making incompetent the statistical detection models. For solving them, we introduce a novel approach to database auditing that explicitly accounts for adversarial behavior by 1) prioritizing the order in which types of alerts are investigated and 2) providing an upper bound on how much resource to allocate for each type. We model the interaction between a database auditor and potential attackers as a Stackelberg game in which the auditor chooses an auditing policy and attackers choose which records to target. A corresponding approach combining linear programming, column generation, and heuristic search is proposed to derive an auditing policy. For testing the policy-searching performance, a publicly available credit card application dataset are adopted, on which it shows that our methods produce high-quality mixed strategies as database audit policies, and our general approach significantly outperforms non-game-theoretic baselines.

CRDec 6, 2017
Systematizing Genome Privacy Research: A Privacy-Enhancing Technologies Perspective

Alexandros Mittos, Bradley Malin, Emiliano De Cristofaro

Rapid advances in human genomics are enabling researchers to gain a better understanding of the role of the genome in our health and well-being, stimulating hope for more effective and cost efficient healthcare. However, this also prompts a number of security and privacy concerns stemming from the distinctive characteristics of genomic data. To address them, a new research community has emerged and produced a large number of publications and initiatives. In this paper, we rely on a structured methodology to contextualize and provide a critical analysis of the current knowledge on privacy-enhancing technologies used for testing, storing, and sharing genomic data, using a representative sample of the work published in the past decade. We identify and discuss limitations, technical challenges, and issues faced by the community, focusing in particular on those that are inherently tied to the nature of the problem and are harder for the community alone to address. Finally, we report on the importance and difficulty of the identified challenges based on an online survey of genome data privacy experts

LGMar 19, 2017
Generating Multi-label Discrete Patient Records using Generative Adversarial Networks

Edward Choi, Siddharth Biswal, Bradley Malin et al.

Access to electronic health record (EHR) data has motivated computational advances in medical research. However, various concerns, particularly over privacy, can limit access to and collaborative use of EHR data. Sharing synthetic EHR data could mitigate risk. In this paper, we propose a new approach, medical Generative Adversarial Network (medGAN), to generate realistic synthetic patient records. Based on input real patient records, medGAN can generate high-dimensional discrete variables (e.g., binary and count features) via a combination of an autoencoder and generative adversarial networks. We also propose minibatch averaging to efficiently avoid mode collapse, and increase the learning efficiency with batch normalization and shortcut connections. To demonstrate feasibility, we showed that medGAN generates synthetic patient records that achieve comparable performance to real data on many experiments including distribution statistics, predictive modeling tasks and a medical expert review. We also empirically observe a limited privacy risk in both identity and attribute disclosure using medGAN.

CRMay 1, 2016
CheapSMC: A Framework to Minimize SMC Cost in Cloud

Erman Pattuk, Murat Kantarcioglu, Huseyin Ulusoy et al.

Secure multi-party computation (SMC) techniques are increasingly becoming more efficient and practical thanks to many recent novel improvements. The recent work have shown that different protocols that are implemented using different sharing mechanisms (e.g., boolean, arithmetic sharings, etc.) may have different computational and communication costs. Although there are some works that automatically mix protocols of different sharing schemes to fasten execution, none of them provide a generic optimization framework to find the cheapest mixed-protocol SMC execution for cloud deployment. In this work, we propose a generic SMC optimization framework CheapSMC that can use any mixed-protocol SMC circuit evaluation tool as a black-box to find the cheapest SMC cloud deployment option. To find the cheapest SMC protocol, CheapSMC runs one time benchmarks for the target cloud service and gathers performance statistics for basic circuit components. Using these performance statistics, optimization layer of CheapSMC runs multiple heuristics to find the cheapest mix-protocol circuit evaluation. Later on, the optimized circuit is passed to a mix-protocol SMC tool for actual executable generation. Our empirical results gathered by running different cases studies show that significant cost savings could be achieved using our optimization framework.