Hyunjik Kim

Sheheryar Zaidi, Michael Schaarschmidt, James Martens et al. · deepmind

Many important problems involving molecular property prediction from 3D structures have limited data, posing a generalization challenge for neural networks. In this paper, we describe a pre-training technique based on denoising that achieves a new state-of-the-art in molecular property prediction by utilizing large datasets of 3D molecular structures at equilibrium to learn meaningful representations for downstream tasks. Relying on the well-known link between denoising autoencoders and score-matching, we show that the denoising objective corresponds to learning a molecular force field -- arising from approximating the Boltzmann distribution with a mixture of Gaussians -- directly from equilibrium structures. Our experiments demonstrate that using this pre-training objective significantly improves performance on multiple benchmarks, achieving a new state-of-the-art on the majority of targets in the widely used QM9 dataset. Our analysis then provides practical insights into the effects of different factors -- dataset sizes, model size and architecture, and the choice of upstream and downstream datasets -- on pre-training.

Sheheryar Zaidi, Tudor Berariu, Hyunjik Kim et al. · deepmind

Re-initializing a neural network during training has been observed to improve generalization in recent works. Yet it is neither widely adopted in deep learning practice nor is it often used in state-of-the-art training protocols. This raises the question of when re-initialization works, and whether it should be used together with regularization techniques such as data augmentation, weight decay and learning rate schedules. In this work, we conduct an extensive empirical comparison of standard training with a selection of re-initialization methods to answer this question, training over 15,000 models on a variety of image classification benchmarks. We first establish that such methods are consistently beneficial for generalization in the absence of any other regularization. However, when deployed alongside other carefully tuned regularization techniques, re-initialization methods offer little to no added benefit for generalization, although optimal generalization performance becomes less sensitive to the choice of learning rate and weight decay hyperparameters. To investigate the impact of re-initialization methods on noisy data, we also consider learning under label noise. Surprisingly, in this case, re-initialization significantly improves upon standard training, even in the presence of other carefully tuned regularization techniques.

Abbas Mehrabian, Ankit Anand, Hyunjik Kim et al.

This work studies a central extremal graph theory problem inspired by a 1975 conjecture of Erdős, which aims to find graphs with a given size (number of nodes) that maximize the number of edges without having 3- or 4-cycles. We formulate this problem as a sequential decision-making problem and compare AlphaZero, a neural network-guided tree search, with tabu search, a heuristic local search method. Using either method, by introducing a curriculum -- jump-starting the search for larger graphs using good graphs found at smaller sizes -- we improve the state-of-the-art lower bounds for several sizes. We also propose a flexible graph-generation environment and a permutation-invariant network architecture for learning to search in the space of graphs.