Jingru Yi

Qilong Zhangli, Jingru Yi, Di Liu et al.

Top-down instance segmentation framework has shown its superiority in object detection compared to the bottom-up framework. While it is efficient in addressing over-segmentation, top-down instance segmentation suffers from over-crop problem. However, a complete segmentation mask is crucial for biological image analysis as it delivers important morphological properties such as shapes and volumes. In this paper, we propose a region proposal rectification (RPR) module to address this challenging incomplete segmentation problem. In particular, we offer a progressive ROIAlign module to introduce neighbor information into a series of ROIs gradually. The ROI features are fed into an attentive feed-forward network (FFN) for proposal box regression. With additional neighbor information, the proposed RPR module shows significant improvement in correction of region proposal locations and thereby exhibits favorable instance segmentation performances on three biological image datasets compared to state-of-the-art baseline methods. Experimental results demonstrate that the proposed RPR module is effective in both anchor-based and anchor-free top-down instance segmentation approaches, suggesting the proposed method can be applied to general top-down instance segmentation of biological images.

Jingru Yi, Burak Uzkent, Oana Ignat et al.

Grounding-based vision and language models have been successfully applied to low-level vision tasks, aiming to precisely locate objects referred in captions. The effectiveness of grounding representation learning heavily relies on the scale of the training dataset. Despite being a useful data enrichment strategy, data augmentation has received minimal attention in existing vision and language tasks as augmentation for image-caption pairs is non-trivial. In this study, we propose a robust phrase grounding model trained with text-conditioned and text-unconditioned data augmentations. Specifically, we apply text-conditioned color jittering and horizontal flipping to ensure semantic consistency between images and captions. To guarantee image-caption correspondence in the training samples, we modify the captions according to pre-defined keywords when applying horizontal flipping. Additionally, inspired by recent masked signal reconstruction, we propose to use pixel-level masking as a novel form of data augmentation. While we demonstrate our data augmentation method with MDETR framework, the proposed approach is applicable to common grounding-based vision and language tasks with other frameworks. Finally, we show that image encoder pretrained on large-scale image and language datasets (such as CLIP) can further improve the results. Through extensive experiments on three commonly applied datasets: Flickr30k, referring expressions and GQA, our method demonstrates advanced performance over the state-of-the-arts with various metrics. Code can be found in https://github.com/amzn/augment-the-pairs-wacv2024.

Zijia Lu, Jingru Yi, Jue Wang et al.

Referring multi-object tracking (RMOT) is a task of associating all the objects in a video that semantically match with given textual queries or referring expressions. Existing RMOT approaches decompose object grounding and tracking into separated modules and exhibit limited performance due to the scarcity of training videos, ambiguous annotations, and restricted domains. In this work, we introduce STORM, an end-to-end MLLM that jointly performs grounding and tracking within a unified framework, eliminating external detectors and enabling coherent reasoning over appearance, motion, and language. To improve data efficiency, we propose a task-composition learning (TCL) strategy that decomposes RMOT into image grounding and object tracking, allowing STORM to leverage data-rich sub-tasks and learn structured spatial--temporal reasoning. We further construct STORM-Bench, a new RMOT dataset with accurate trajectories and diverse, unambiguous referring expressions generated through a bottom-up annotation pipeline. Extensive experiments show that STORM achieves state-of-the-art performance on image grounding, single-object tracking, and RMOT benchmarks, demonstrating strong generalization and robust spatial--temporal grounding in complex real-world scenarios. STORM-Bench is released at https://github.com/amazon-science/storm-referring-multi-object-grounding.

Jingru Yi, Pengxiang Wu, Bo Liu et al.

Oriented object detection in aerial images is a challenging task as the objects in aerial images are displayed in arbitrary directions and are usually densely packed. Current oriented object detection methods mainly rely on two-stage anchor-based detectors. However, the anchor-based detectors typically suffer from a severe imbalance issue between the positive and negative anchor boxes. To address this issue, in this work we extend the horizontal keypoint-based object detector to the oriented object detection task. In particular, we first detect the center keypoints of the objects, based on which we then regress the box boundary-aware vectors (BBAVectors) to capture the oriented bounding boxes. The box boundary-aware vectors are distributed in the four quadrants of a Cartesian coordinate system for all arbitrarily oriented objects. To relieve the difficulty of learning the vectors in the corner cases, we further classify the oriented bounding boxes into horizontal and rotational bounding boxes. In the experiment, we show that learning the box boundary-aware vectors is superior to directly predicting the width, height, and angle of an oriented bounding box, as adopted in the baseline method. Besides, the proposed method competes favorably with state-of-the-art methods. Code is available at https://github.com/yijingru/BBAVectors-Oriented-Object-Detection.

Jingru Yi, Pengxiang Wu, Qiaoying Huang et al.

Adolescent idiopathic scoliosis (AIS) is a lifetime disease that arises in children. Accurate estimation of Cobb angles of the scoliosis is essential for clinicians to make diagnosis and treatment decisions. The Cobb angles are measured according to the vertebrae landmarks. Existing regression-based methods for the vertebra landmark detection typically suffer from large dense mapping parameters and inaccurate landmark localization. The segmentation-based methods tend to predict connected or corrupted vertebra masks. In this paper, we propose a novel vertebra-focused landmark detection method. Our model first localizes the vertebra centers, based on which it then traces the four corner landmarks of the vertebra through the learned corner offset. In this way, our method is able to keep the order of the landmarks. The comparison results demonstrate the merits of our method in both Cobb angle measurement and landmark detection on low-contrast and ambiguous X-ray images. Code is available at: \url{https://github.com/yijingru/Vertebra-Landmark-Detection}.

Jingru Yi, Pengxiang Wu, Qiaoying Huang et al.

Most existing methods handle cell instance segmentation problems directly without relying on additional detection boxes. These methods generally fails to separate touching cells due to the lack of global understanding of the objects. In contrast, box-based instance segmentation solves this problem by combining object detection with segmentation. However, existing methods typically utilize anchor box-based detectors, which would lead to inferior instance segmentation performance due to the class imbalance issue. In this paper, we propose a new box-based cell instance segmentation method. In particular, we first detect the five pre-defined points of a cell via keypoints detection. Then we group these points according to a keypoint graph and subsequently extract the bounding box for each cell. Finally, cell segmentation is performed on feature maps within the bounding boxes. We validate our method on two cell datasets with distinct object shapes, and empirically demonstrate the superiority of our method compared to other instance segmentation techniques. Code is available at: https://github.com/yijingru/KG_Instance_Segmentation.

Qiaoying Huang, Dong Yang, Yikun Xian et al.

The accurate reconstruction of under-sampled magnetic resonance imaging (MRI) data using modern deep learning technology, requires significant effort to design the necessary complex neural network architectures. The cascaded network architecture for MRI reconstruction has been widely used, while it suffers from the "vanishing gradient" problem when the network becomes deep. In addition, homogeneous architecture degrades the representation capacity of the network. In this work, we present an enhanced MRI reconstruction network using a residual in residual basic block. For each cell in the basic block, we use the differentiable neural architecture search (NAS) technique to automatically choose the optimal operation among eight variants of the dense block. This new heterogeneous network is evaluated on two publicly available datasets and outperforms all current state-of-the-art methods, which demonstrates the effectiveness of our proposed method.

Meng Ye, Qiaoying Huang, Dong Yang et al.

The 3D volumetric shape of the heart's left ventricle (LV) myocardium (MYO) wall provides important information for diagnosis of cardiac disease and invasive procedure navigation. Many cardiac image segmentation methods have relied on detection of region-of-interest as a pre-requisite for shape segmentation and modeling. With segmentation results, a 3D surface mesh and a corresponding point cloud of the segmented cardiac volume can be reconstructed for further analyses. Although state-of-the-art methods (e.g., U-Net) have achieved decent performance on cardiac image segmentation in terms of accuracy, these segmentation results can still suffer from imaging artifacts and noise, which will lead to inaccurate shape modeling results. In this paper, we propose a PC-U net that jointly reconstructs the point cloud of the LV MYO wall directly from volumes of 2D CT slices and generates its segmentation masks from the predicted 3D point cloud. Extensive experimental results show that by incorporating a shape prior from the point cloud, the segmentation masks are more accurate than the state-of-the-art U-Net results in terms of Dice's coefficient and Hausdorff distance.The proposed joint learning framework of our PC-U net is beneficial for automatic cardiac image analysis tasks because it can obtain simultaneously the 3D shape and segmentation of the LV MYO walls.

Pengxiang Wu, Chao Chen, Jingru Yi et al.

We present a new permutation-invariant network for 3D point cloud processing. Our network is composed of a recurrent set encoder and a convolutional feature aggregator. Given an unordered point set, the encoder firstly partitions its ambient space into parallel beams. Points within each beam are then modeled as a sequence and encoded into subregional geometric features by a shared recurrent neural network (RNN). The spatial layout of the beams is regular, and this allows the beam features to be further fed into an efficient 2D convolutional neural network (CNN) for hierarchical feature aggregation. Our network is effective at spatial feature learning, and competes favorably with the state-of-the-arts (SOTAs) on a number of benchmarks. Meanwhile, it is significantly more efficient compared to the SOTAs.

Jingru Yi, Hui Tang, Pengxiang Wu et al.

Instance segmentation of biological images is essential for studying object behaviors and properties. The challenges, such as clustering, occlusion, and adhesion problems of the objects, make instance segmentation a non-trivial task. Current box-free instance segmentation methods typically rely on local pixel-level information. Due to a lack of global object view, these methods are prone to over- or under-segmentation. On the contrary, the box-based instance segmentation methods incorporate object detection into the segmentation, performing better in identifying the individual instances. In this paper, we propose a new box-based instance segmentation method. Mainly, we locate the object bounding boxes from their center points. The object features are subsequently reused in the segmentation branch as a guide to separate the clustered instances within an RoI patch. Along with the instance normalization, the model is able to recover the target object distribution and suppress the distribution of neighboring attached objects. Consequently, the proposed model performs excellently in segmenting the clustered objects while retaining the target object details. The proposed method achieves state-of-the-art performances on three biological datasets: cell nuclei, plant phenotyping dataset, and neural cells.

Jingru Yi, Pengxiang Wu, Dimitris N. Metaxas

This paper proposes a new deep neural network for object detection. The proposed network, termed ASSD, builds feature relations in the spatial space of the feature map. With the global relation information, ASSD learns to highlight useful regions on the feature maps while suppressing the irrelevant information, thereby providing reliable guidance for object detection. Compared to methods that rely on complicated CNN layers to refine the feature maps, ASSD is simple in design and is computationally efficient. Experimental results show that ASSD competes favorably with the state-of-the-arts, including SSD, DSSD, FSSD and RetinaNet.

Qiaoying Huang, Dong Yang, Pengxiang Wu et al.

We consider an MRI reconstruction problem with input of k-space data at a very low undersampled rate. This can practically benefit patient due to reduced time of MRI scan, but it is also challenging since quality of reconstruction may be compromised. Currently, deep learning based methods dominate MRI reconstruction over traditional approaches such as Compressed Sensing, but they rarely show satisfactory performance in the case of low undersampled k-space data. One explanation is that these methods treat channel-wise features equally, which results in degraded representation ability of the neural network. To solve this problem, we propose a new model called MRI Cascaded Channel-wise Attention Network (MICCAN), highlighted by three components: (i) a variant of U-net with Channel-wise Attention (UCA) module, (ii) a long skip connection and (iii) a combined loss. Our model is able to attend to salient information by filtering irrelevant features and also concentrate on high-frequency information by enforcing low-frequency information bypassed to the final output. We conduct both quantitative evaluation and qualitative analysis of our method on a cardiac dataset. The experiment shows that our method achieves very promising results in terms of three common metrics on the MRI reconstruction with low undersampled k-space data.