Wenhao Ye

Junfeng Xia, Wenhao Ye, Xuanye Pan et al.

Current fMRI foundation models primarily rely on a limited range of brain states and mismatched pretraining tasks, restricting their ability to learn generalized representations across diverse brain states. We present \textit{Brain-DiT}, a universal multi-state fMRI foundation model pretrained on 349,898 sessions from 24 datasets spanning resting, task, naturalistic, disease, and sleep states. Unlike prior fMRI foundation models that rely on masked reconstruction in the raw-signal space or a latent space, \textit{Brain-DiT} adopts metadata-conditioned diffusion pretraining with a Diffusion Transformer (DiT), enabling the model to learn multi-scale representations that capture both fine-grained functional structure and global semantics. Across extensive evaluations and ablations on 7 downstream tasks, we find consistent evidence that diffusion-based generative pretraining is a stronger proxy than reconstruction or alignment, with metadata-conditioned pretraining further improving downstream performance by disentangling intrinsic neural dynamics from population-level variability. We also observe that downstream tasks exhibit distinct preferences for representational scale: ADNI classification benefits more from global semantic representations, whereas age/sex prediction comparatively relies more on fine-grained local structure. Code and parameters of Brain-DiT are available at \href{https://github.com/REDMAO4869/Brain-DiT}{Link}.

Mo Wang, Junfeng Xia, Wenhao Ye et al.

Foundation models are emerging as a powerful paradigm for fMRI analysis, but current approaches face a dual bottleneck of data- and training-efficiency. Atlas-based methods aggregate voxel signals into fixed regions of interest, reducing data dimensionality but discarding fine-grained spatial details, and requiring extremely large cohorts to train effectively as general-purpose foundation models. Atlas-free methods, on the other hand, operate directly on voxel-level information - preserving spatial fidelity but are prohibitively memory- and compute-intensive, making large-scale pre-training infeasible. We introduce SLIM-Brain (Sample-efficient, Low-memory fMRI Foundation Model for Human Brain), a new atlas-free foundation model that simultaneously improves both data- and training-efficiency. SLIM-Brain adopts a two-stage adaptive design: (i) a lightweight temporal extractor captures global context across full sequences and ranks data windows by saliency, and (ii) a 4D hierarchical encoder (Hiera-JEPA) learns fine-grained voxel-level representations only from the top-$k$ selected windows, while deleting about 70% masked patches. Extensive experiments across seven public benchmarks show that SLIM-Brain establishes new state-of-the-art performance on diverse tasks, while requiring only 4 thousand pre-training sessions and approximately 30% of GPU memory comparing to traditional voxel-level methods.

Wenhao Ye, Tiansheng Zheng, Yue Qi et al.

The intangible cultural heritage (ICH) of China, a cultural asset transmitted across generations by various ethnic groups, serves as a significant testament to the evolution of human civilization and holds irreplaceable value for the preservation of historical lineage and the enhancement of cultural self-confidence. However, the rapid pace of modernization poses formidable challenges to ICH, including threats damage, disappearance and discontinuity of inheritance. China has the highest number of items on the UNESCO Intangible Cultural Heritage List, which is indicative of the nation's abundant cultural resources and emphasises the pressing need for ICH preservation. In recent years, the rapid advancements in large language modelling have provided a novel technological approach for the preservation and dissemination of ICH. This study utilises a substantial corpus of open-source Chinese ICH data to develop a large language model, ICH-Qwen, for the ICH domain. The model employs natural language understanding and knowledge reasoning capabilities of large language models, augmented with synthetic data and fine-tuning techniques. The experimental results demonstrate the efficacy of ICH-Qwen in executing tasks specific to the ICH domain. It is anticipated that the model will provide intelligent solutions for the protection, inheritance and dissemination of intangible cultural heritage, as well as new theoretical and practical references for the sustainable development of intangible cultural heritage. Furthermore, it is expected that the study will open up new paths for digital humanities research.

Lingyi Chen, Shitong Wu, Wenhao Ye et al.

The Blahut-Arimoto (BA) algorithm has played a fundamental role in the numerical computation of rate-distortion (RD) functions. This algorithm possesses a desirable monotonic convergence property by alternatively minimizing its Lagrangian with a fixed multiplier. In this paper, we propose a novel modification of the BA algorithm, wherein the multiplier is updated through a one-dimensional root-finding step using a monotonic univariate function, efficiently implemented by Newton's method in each iteration. Consequently, the modified algorithm directly computes the RD function for a given target distortion, without exploring the entire RD curve as in the original BA algorithm. Moreover, this modification presents a versatile framework, applicable to a wide range of problems, including the computation of distortion-rate (DR) functions. Theoretical analysis shows that the outputs of the modified algorithms still converge to the solutions of the RD and DR functions with rate $O(1/n)$, where $n$ is the number of iterations. Additionally, these algorithms provide $\varepsilon$-approximation solutions with $O\left(\frac{MN\log N}{\varepsilon}(1+\log |\log \varepsilon|)\right)$ arithmetic operations, where $M,N$ are the sizes of source and reproduced alphabets respectively. Numerical experiments demonstrate that the modified algorithms exhibit significant acceleration compared with the original BA algorithms and showcase commendable performance across classical source distributions such as discretized Gaussian, Laplacian and uniform sources.