Catalin Fetita

Rezkellah Noureddine Khiati, Pierre-Yves Brillet, Aurélien Justet et al.

This paper addresses the problem of pathological lung segmentation, a significant challenge in medical image analysis, particularly pronounced in cases of peripheral opacities (severe fibrosis and consolidation) because of the textural similarity between lung tissue and surrounding areas. To overcome these challenges, this paper emphasizes the use of CycleGAN for unpaired image-to-image translation, in order to provide an augmentation method able to generate fake pathological images matching an existing ground truth. Although previous studies have employed CycleGAN, they often neglect the challenge of shape deformation, which is crucial for accurate medical image segmentation. Our work introduces an innovative strategy that incorporates additional loss functions. Specifically, it proposes an L1 loss based on the lung surrounding which shape is constrained to remain unchanged at the transition from the healthy to pathological domains. The lung surrounding is derived based on ground truth lung masks available in the healthy domain. Furthermore, preprocessing steps, such as cropping based on ribs/vertebra locations, are applied to refine the input for the CycleGAN, ensuring that the network focus on the lung region. This is essential to avoid extraneous biases, such as the zoom effect bias, which can divert attention from the main task. The method is applied to enhance in semi-supervised manner the lung segmentation process by employing a U-Net model trained with on-the-fly data augmentation incorporating synthetic pathological tissues generated by the CycleGAN model. Preliminary results from this research demonstrate significant qualitative and quantitative improvements, setting a new benchmark in the field of pathological lung segmentation. Our code is available at https://github.com/noureddinekhiati/Semi-supervised-lung-segmentation

Marie Reinbigler, Rishi Sharma, Rafael Pires et al.

Analyzing gigapixel images is recognized as computationally demanding. In this paper, we introduce PyramidAI, a technique for analyzing gigapixel images with reduced computational cost. The proposed approach adopts a gradual analysis of the image, beginning with lower resolutions and progressively concentrating on regions of interest for detailed examination at higher resolutions. We investigated two strategies for tuning the accuracy-computation performance trade-off when implementing the adaptive resolution selection, validated against the Camelyon16 dataset of biomedical images. Our results demonstrate that PyramidAI substantially decreases the amount of processed data required for analysis by up to 2.65x, while preserving the accuracy in identifying relevant sections on a single computer. To ensure democratization of gigapixel image analysis, we evaluated the potential to use mainstream computers to perform the computation by exploiting the parallelism potential of the approach. Using a simulator, we estimated the best data distribution and load balancing algorithm according to the number of workers. The selected algorithms were implemented and highlighted the same conclusions in a real-world setting. Analysis time is reduced from more than an hour to a few minutes using 12 modest workers, offering a practical solution for efficient large-scale image analysis.