SEFeb 6, 2016
Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3)Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer et al.
This report records and discusses the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). The report includes a description of the keynote presentation of the workshop, which served as an overview of sustainable scientific software. It also summarizes a set of lightning talks in which speakers highlighted to-the-point lessons and challenges pertaining to sustaining scientific software. The final and main contribution of the report is a summary of the discussions, future steps, and future organization for a set of self-organized working groups on topics including developing pathways to funding scientific software; constructing useful common metrics for crediting software stakeholders; identifying principles for sustainable software engineering design; reaching out to research software organizations around the world; and building communities for software sustainability. For each group, we include a point of contact and a landing page that can be used by those who want to join that group's future activities. The main challenge left by the workshop is to see if the groups will execute these activities that they have scheduled, and how the WSSSPE community can encourage this to happen.
SEJul 7, 2015
Report on the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2)Daniel S. Katz, Sou-Cheng T. Choi, Nancy Wilkins-Diehr et al.
This technical report records and discusses the Second Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE2). The report includes a description of the alternative, experimental submission and review process, two workshop keynote presentations, a series of lightning talks, a discussion on sustainability, and five discussions from the topic areas of exploring sustainability; software development experiences; credit & incentives; reproducibility & reuse & sharing; and code testing & code review. For each topic, the report includes a list of tangible actions that were proposed and that would lead to potential change. The workshop recognized that reliance on scientific software is pervasive in all areas of world-leading research today. The workshop participants then proceeded to explore different perspectives on the concept of sustainability. Key enablers and barriers of sustainable scientific software were identified from their experiences. In addition, recommendations with new requirements such as software credit files and software prize frameworks were outlined for improving practices in sustainable software engineering. There was also broad consensus that formal training in software development or engineering was rare among the practitioners. Significant strides need to be made in building a sense of community via training in software and technical practices, on increasing their size and scope, and on better integrating them directly into graduate education programs. Finally, journals can define and publish policies to improve reproducibility, whereas reviewers can insist that authors provide sufficient information and access to data and software to allow them reproduce the results in the paper. Hence a list of criteria is compiled for journals to provide to reviewers so as to make it easier to review software submitted for publication as a "Software Paper."
IMFeb 3, 2015
Learning from FITS: Limitations in use in modern astronomical researchBrian Thomas, Tim Jenness, Frossie Economou et al.
The Flexible Image Transport System (FITS) standard has been a great boon to astronomy, allowing observatories, scientists and the public to exchange astronomical information easily. The FITS standard, however, is showing its age. Developed in the late 1970s, the FITS authors made a number of implementation choices that, while common at the time, are now seen to limit its utility with modern data. The authors of the FITS standard could not anticipate the challenges which we are facing today in astronomical computing. Difficulties we now face include, but are not limited to, addressing the need to handle an expanded range of specialized data product types (data models), being more conducive to the networked exchange and storage of data, handling very large datasets, and capturing significantly more complex metadata and data relationships. There are members of the community today who find some or all of these limitations unworkable, and have decided to move ahead with storing data in other formats. If this fragmentation continues, we risk abandoning the advantages of broad interoperability, and ready archivability, that the FITS format provides for astronomy. In this paper we detail some selected important problems which exist within the FITS standard today. These problems may provide insight into deeper underlying issues which reside in the format and we provide a discussion of some lessons learned. It is not our intention here to prescribe specific remedies to these issues; rather, it is to call attention of the FITS and greater astronomical computing communities to these problems in the hope that it will spur action to address them.