Per Christian Hansen

Silvia Gazzola, Per Christian Hansen, James G. Nagy

This paper describes a new MATLAB software package of iterative regularization methods and test problems for large-scale linear inverse problems. The software package, called IR Tools, serves two related purposes: we provide implementations of a range of iterative solvers, including several recently proposed methods that are not available elsewhere, and we provide a set of large-scale test problems in the form of discretizations of 2D linear inverse problems. The solvers include iterative regularization methods where the regularization is due to the semi-convergence of the iterations, Tikhonov-type formulations where the regularization is explicitly formulated in the form of a regularization term, and methods that can impose bound constraints on the computed solutions. All the iterative methods are implemented in a very flexible fashion that allows the problem's coefficient matrix to be available as a (sparse) matrix, a function handle, or an object. The most basic call to all of the various iterative methods requires only this matrix and the right hand side vector; if the method uses any special stopping criteria, regularization parameters, etc., then default values are set automatically by the code. Moreover, through the use of an optional input structure, the user can also have full control of any of the algorithm parameters. The test problems represent realistic large-scale problems found in image reconstruction and several other applications. Numerical examples illustrate the various algorithms and test problems available in this package.

Jakob S. Jørgensen, Emil Y. Sidky, Per Christian Hansen et al.

In x-ray computed tomography (CT) it is generally acknowledged that reconstruction methods exploiting image sparsity allow reconstruction from a significantly reduced number of projections. The use of such reconstruction methods is motivated by recent progress in compressed sensing (CS). However, the CS framework provides neither guarantees of accurate CT reconstruction, nor any relation between sparsity and a sufficient number of measurements for recovery, i.e., perfect reconstruction from noise-free data. We consider reconstruction through 1-norm minimization, as proposed in CS, from data obtained using a standard CT fan-beam sampling pattern. In empirical simulation studies we establish quantitatively a relation between the image sparsity and the sufficient number of measurements for recovery within image classes motivated by tomographic applications. We show empirically that the specific relation depends on the image class and in many cases exhibits a sharp phase transition as seen in CS, i.e. same-sparsity image require the same number of projections for recovery. Finally we demonstrate that the relation holds independently of image size and is robust to small amounts of additive Gaussian noise.

Yiqiu Dong, Per Christian Hansen, Michiel E. Hochstenbach et al.

We consider algebraic iterative reconstruction methods with applications in image reconstruction. In particular, we are concerned with methods based on an unmatched projector/backprojector pair; i.e., the backprojector is not the exact adjoint or transpose of the forward projector. Such situations are common in large-scale computed tomography, and we consider the common situation where the method does not converge due to the nonsymmetry of the iteration matrix. We propose a modified algorithm that incorporates a small shift parameter, and we give the conditions that guarantee convergence of this method to a fixed point of a slightly perturbed problem. We also give perturbation bounds for this fixed point. Moreover, we discuss how to use Krylov subspace methods to efficiently estimate the leftmost eigenvalue of a certain matrix to select a proper shift parameter. The modified algorithm is illustrated with test problems from computed tomography.

Rasmus Dalgas Kongskov, Jakob Sauer Jørgensen, Henning Friis Poulsen et al.

Classical reconstruction methods for phase-contrast tomography consist of two stages: phase retrieval and tomographic reconstruction. A novel algebraic method combining the two was suggested by Kostenko et al. (Opt. Express, 21, 12185, 2013) and preliminary results demonstrating improved reconstruction compared to a two-stage method given. Using simulated free-space propagation experiments with a single sample-detector distance, we thoroughly compare the novel method with the two-stage method to address limitations of the preliminary results. We demonstrate that the novel method is substantially more robust towards noise; our simulations point to a possible reduction in counting times by an order of magnitude.

Sara Soltani, Misha E. Kilmer, Per Christian Hansen

We consider tomographic reconstruction using priors in the form of a dictionary learned from training images. The reconstruction has two stages: first we construct a tensor dictionary prior from our training data, and then we pose the reconstruction problem in terms of recovering the expansion coefficients in that dictionary. Our approach differs from past approaches in that a) we use a third-order tensor representation for our images and b) we recast the reconstruction problem using the tensor formulation. The dictionary learning problem is presented as a non-negative tensor factorization problem with sparsity constraints. The reconstruction problem is formulated in a convex optimization framework by looking for a solution with a sparse representation in the tensor dictionary. Numerical results show that our tensor formulation leads to very sparse representations of both the training images and the reconstructions due to the ability of representing repeated features compactly in the dictionary.

Sara Soltani, Martin S. Andersen, Per Christian Hansen

We describe and examine an algorithm for tomographic image reconstruction where prior knowledge about the solution is available in the form of training images. We first construct a nonnegative dictionary based on prototype elements from the training images; this problem is formulated as a regularized non-negative matrix factorization. Incorporating the dictionary as a prior in a convex reconstruction problem, we then find an approximate solution with a sparse representation in the dictionary. The dictionary is applied to non-overlapping patches of the image, which reduces the computational complexity compared to other algorithms. Computational experiments clarify the choice and interplay of the model parameters and the regularization parameters, and we show that in few-projection low-dose settings our algorithm is competitive with total variation regularization and tends to include more texture and more correct edges.