Chuntao Hong

Boci Peng, Yun Zhu, Yongchao Liu et al.

Recently, Retrieval-Augmented Generation (RAG) has achieved remarkable success in addressing the challenges of Large Language Models (LLMs) without necessitating retraining. By referencing an external knowledge base, RAG refines LLM outputs, effectively mitigating issues such as ``hallucination'', lack of domain-specific knowledge, and outdated information. However, the complex structure of relationships among different entities in databases presents challenges for RAG systems. In response, GraphRAG leverages structural information across entities to enable more precise and comprehensive retrieval, capturing relational knowledge and facilitating more accurate, context-aware responses. Given the novelty and potential of GraphRAG, a systematic review of current technologies is imperative. This paper provides the first comprehensive overview of GraphRAG methodologies. We formalize the GraphRAG workflow, encompassing Graph-Based Indexing, Graph-Guided Retrieval, and Graph-Enhanced Generation. We then outline the core technologies and training methods at each stage. Additionally, we examine downstream tasks, application domains, evaluation methodologies, and industrial use cases of GraphRAG. Finally, we explore future research directions to inspire further inquiries and advance progress in the field. In order to track recent progress in this field, we set up a repository at \url{https://github.com/pengboci/GraphRAG-Survey}.

Xiaotang Wang, Yun Zhu, Haizhou Shi et al.

Graph Transformers (GTs) have recently achieved significant success in the graph domain by effectively capturing both long-range dependencies and graph inductive biases. However, these methods face two primary challenges: (1) multi-view chaos, which results from coupling multi-view information (positional, structural, attribute), thereby impeding flexible usage and the interpretability of the propagation process. (2) local-global chaos, which arises from coupling local message passing with global attention, leading to issues of overfitting and over-globalizing. To address these challenges, we propose a high-level decoupled perspective of GTs, breaking them down into three components and two interaction levels: positional attention, structural attention, and attribute attention, alongside local and global interaction. Based on this decoupled perspective, we design a decoupled graph triple attention network named DeGTA, which separately computes multi-view attentions and adaptively integrates multi-view local and global information. This approach offers three key advantages: enhanced interpretability, flexible design, and adaptive integration of local and global information. Through extensive experiments, DeGTA achieves state-of-the-art performance across various datasets and tasks, including node classification and graph classification. Comprehensive ablation studies demonstrate that decoupling is essential for improving performance and enhancing interpretability. Our code is available at: https://github.com/wangxiaotang0906/DeGTA

Yunhui Liu, Pengyu Qiu, Yu Xing et al.

Attributed Graph Clustering (AGC) is a fundamental unsupervised task that integrates structural topology and node attributes to uncover latent patterns in graph-structured data. Despite its significance in industrial applications such as fraud detection and user segmentation, a significant chasm persists between academic research and real-world deployment. Current evaluation protocols suffer from the small-scale, high-homophily citation datasets, non-scalable full-batch training paradigms, and a reliance on supervised metrics that fail to reflect performance in label-scarce environments. To bridge these gaps, we present PyAGC, a comprehensive, production-ready benchmark and library designed to stress-test AGC methods across diverse scales and structural properties. We unify existing methodologies into a modular Encode-Cluster-Optimize framework and, for the first time, provide memory-efficient, mini-batch implementations for a wide array of state-of-the-art AGC algorithms. Our benchmark curates 12 diverse datasets, ranging from 2.7K to 111M nodes, specifically incorporating industrial graphs with complex tabular features and low homophily. Furthermore, we advocate for a holistic evaluation protocol that mandates unsupervised structural metrics and efficiency profiling alongside traditional supervised metrics. Battle-tested in high-stakes industrial workflows at Ant Group, this benchmark offers the community a robust, reproducible, and scalable platform to advance AGC research towards realistic deployment. The code and resources are publicly available via GitHub (https://github.com/Cloudy1225/PyAGC), PyPI (https://pypi.org/project/pyagc), and Documentation (https://pyagc.readthedocs.io).

Yun Zhu, Haizhou Shi, Xiaotang Wang et al.

Recently, research on Text-Attributed Graphs (TAGs) has gained significant attention due to the prevalence of free-text node features in real-world applications and the advancements in Large Language Models (LLMs) that bolster TAG methodologies. However, current TAG approaches face two primary challenges: (i) Heavy reliance on label information and (ii) Limited cross-domain zero/few-shot transferability. These issues constrain the scaling of both data and model size, owing to high labor costs and scaling laws, complicating the development of graph foundation models with strong transferability. In this work, we propose the GraphCLIP framework to address these challenges by learning graph foundation models with strong cross-domain zero/few-shot transferability through a self-supervised contrastive graph-summary pretraining method. Specifically, we generate and curate large-scale graph-summary pair data with the assistance of LLMs, and introduce a novel graph-summary pretraining method, combined with invariant learning, to enhance graph foundation models with strong cross-domain zero-shot transferability. For few-shot learning, we propose a novel graph prompt tuning technique aligned with our pretraining objective to mitigate catastrophic forgetting and minimize learning costs. Extensive experiments show the superiority of GraphCLIP in both zero-shot and few-shot settings, while evaluations across various downstream tasks confirm the versatility of GraphCLIP. Our code is available at: https://github.com/ZhuYun97/GraphCLIP

Songlin Lyu, Lujie Ban, Zihang Wu et al.

Graph models are fundamental to data analysis in domains rich with complex relationships. Text-to-Graph-Query-Language (Text-to-GQL) systems act as a translator, converting natural language into executable graph queries. This capability allows Large Language Models (LLMs) to directly analyze and manipulate graph data, posi-tioning them as powerful agent infrastructures for Graph Database Management System (GDBMS). Despite recent progress, existing datasets are often limited in domain coverage, supported graph query languages, or evaluation scope. The advancement of Text-to-GQL systems is hindered by the lack of high-quality benchmark datasets and evaluation methods to systematically compare model capabilities across different graph query languages and domains. In this work, we present Text2GQL-Bench, a unified Text-to-GQL benchmark designed to address these limitations. Text2GQL-Bench couples a multi-GQL dataset that has 178,184 (Question, Query) pairs spanning 13 domains, with a scalable construction framework that generates datasets in different domains, question abstraction levels, and GQLs with heterogeneous resources. To support compre-hensive assessment, we introduce an evaluation method that goes beyond a single end-to-end metric by jointly reporting grammatical validity, similarity, semantic alignment, and execution accuracy. Our evaluation uncovers a stark dialect gap in ISO-GQL generation: even strong LLMs achieve only at most 4% execution accuracy (EX) in zero-shot settings, though a fixed 3-shot prompt raises accuracy to around 50%, the grammatical validity remains lower than 70%. Moreover, a fine-tuned 8B open-weight model reaches 45.1% EX, and 90.8% grammatical validity, demonstrating that most of the performance jump is unlocked by exposure to sufficient ISO-GQL examples.

Runlin Lei, Lu Yi, Mingguo He et al.

While Graph Neural Networks (GNNs) and Large Language Models (LLMs) are powerful approaches for learning on Text-Attributed Graphs (TAGs), a comprehensive understanding of their robustness remains elusive. Current evaluations are fragmented, failing to systematically investigate the distinct effects of textual and structural perturbations across diverse models and attack scenarios. To address these limitations, we introduce a unified and comprehensive framework to evaluate robustness in TAG learning. Our framework evaluates classical GNNs, robust GNNs (RGNNs), and GraphLLMs across ten datasets from four domains, under diverse text-based, structure-based, and hybrid perturbations in both poisoning and evasion scenarios. Our extensive analysis reveals multiple findings, among which three are particularly noteworthy: 1) models have inherent robustness trade-offs between text and structure, 2) the performance of GNNs and RGNNs depends heavily on the text encoder and attack type, and 3) GraphLLMs are particularly vulnerable to training data corruption. To overcome the identified trade-offs, we introduce SFT-auto, a novel framework that delivers superior and balanced robustness against both textual and structural attacks within a single model. Our work establishes a foundation for future research on TAG security and offers practical solutions for robust TAG learning in adversarial environments. Our code is available at: https://github.com/Leirunlin/TGRB.

Chengying Huan, Ziheng Meng, Yongchao Liu et al.

Graph Chain-of-Thought (Graph-CoT) enables large language models (LLMs) to perform step-by-step reasoning over graph-structured knowledge, but existing pipelines suffer from low accuracy, excessive token usage, high latency, and low throughput due to single-agent monolithic prompts, repeated context re-encoding, and inefficient serving execution. We present GLM, the first multi-agent Graph-CoT system co-designed with an optimized LLM serving architecture. GLM decomposes reasoning into specialized agents for classification, reasoning, action generation, and graph retrieval, enabling branching and selective context sharing to reduce prompt length and reasoning iterations while preserving reasoning quality, thereby improving accuracy and reducing overall token consumption. To scale inference, we introduce a Graph-CoT-aware LLM inference mechanism with graph-specific KV-cache management, priority-based eviction, and pipelined execution to improve serving efficiency. Experiments demonstrate that GLM improves answer accuracy by up to 38%, reduces token cost by up to 95.7%, lowers inference latency by 90.3%, and achieves up to 15.1x higher throughput compared to state-of-the-art Graph-CoT baselines, enabling efficient adoption for complex real-world reasoning at scale.

Boci Peng, Yongchao Liu, Xiaohe Bo et al.

Commonsense question answering is a crucial task that requires machines to employ reasoning according to commonsense. Previous studies predominantly employ an extracting-and-modeling paradigm to harness the information in KG, which first extracts relevant subgraphs based on pre-defined rules and then proceeds to design various strategies aiming to improve the representations and fusion of the extracted structural knowledge. Despite their effectiveness, there are still two challenges. On one hand, subgraphs extracted by rule-based methods may have the potential to overlook critical nodes and result in uncontrollable subgraph size. On the other hand, the misalignment between graph and text modalities undermines the effectiveness of knowledge fusion, ultimately impacting the task performance. To deal with the problems above, we propose a novel framework: \textbf{S}ubgraph R\textbf{E}trieval Enhanced by Gra\textbf{P}h-\textbf{T}ext \textbf{A}lignment, named \textbf{SEPTA}. Firstly, we transform the knowledge graph into a database of subgraph vectors and propose a BFS-style subgraph sampling strategy to avoid information loss, leveraging the analogy between BFS and the message-passing mechanism. In addition, we propose a bidirectional contrastive learning approach for graph-text alignment, which effectively enhances both subgraph retrieval and knowledge fusion. Finally, all the retrieved information is combined for reasoning in the prediction module. Extensive experiments on five datasets demonstrate the effectiveness and robustness of our framework.

Yuwei Hu, Xinyi Huang, Zhewei Wei et al.

Large Language Models (LLMs) for Graph Reasoning have been extensively studied over the past two years, involving enabling LLMs to understand graph structures and reason on graphs to solve various graph problems, with graph algorithm problems being the most prevalent. Recent studies underscore the potential of LLMs in handling graph reasoning tasks, but their performance is underwhelming. In this work, we point out issues with existing methods and benchmarks, and rethink the direction that LLMs for graph reasoning should strive toward. We find that base models, e.g., GPT-4o-mini, are largely underestimated due to improper reasoning focus. Base models with reasoning focus redirected from replicating graph algorithms to designing them can easily solve most graph reasoning tasks in existing benchmarks. To truly evaluate the graph reasoning capabilities of LLMs, we construct a more challenging GraphAlgorithm benchmark, comprising 239 different graph problems and 3,041 test instances collected from 4 competition platforms. Finally, we introduce a simple and strong baseline Simple-Reasoning-Then-Coding (Simple-RTC)-which guides LLMs to design graph algorithms first and then code to address graph reasoning tasks. Simple-RTC achieves near-perfect accuracy on existing benchmarks and significantly outperforms GPT-4o-mini and all prior methods on the GraphAlgorithm benchmark. This strong baseline encourages further advancements in LLMs for Graph Reasoning in the future.

Jie Peng, Jiarui Ji, Runlin Lei et al.

Dynamic Text-Attributed Graphs (DyTAGs), which intricately integrate structural, temporal, and textual attributes, are crucial for modeling complex real-world systems. However, most of the existing DyTAG datasets exhibit poor textual quality, which severely limits their utility for DyTAG generation tasks requiring semantically rich inputs. Additionally, prior work mainly focuses on discriminative tasks on DyTAGs, resulting in a lack of standardized task formulations and evaluation protocols tailored for DyTAG generation. To address these critical issues, we propose Generative DyTAG Benchmark (GDGB), which comprises eight meticulously curated DyTAG datasets with high-quality textual features for both nodes and edges, overcoming limitations of prior datasets. Building on GDGB, we define two novel DyTAG generation tasks: Transductive Dynamic Graph Generation (TDGG) and Inductive Dynamic Graph Generation (IDGG). TDGG transductively generates a target DyTAG based on the given source and destination node sets, while the more challenging IDGG introduces new node generation to inductively model the dynamic expansion of real-world graph data. To enable holistic evaluation, we design multifaceted metrics that assess the structural, temporal, and textual quality of the generated DyTAGs. We further propose GAG-General, an LLM-based multi-agent generative framework tailored for reproducible and robust benchmarking of DyTAG generation. Experimental results demonstrate that GDGB enables rigorous evaluation of TDGG and IDGG, with key insights revealing the critical interplay of structural and textual features in DyTAG generation. These findings establish GDGB as a foundational resource for advancing generative DyTAG research and unlocking further practical applications in DyTAG generation. GDGB datasets, source codes, and leaderboards are available at \href{https://gdgb-algo.github.io/}{here}.

Bin Dou, Baokun Wang, Yun Zhu et al.

User targeting, the process of selecting targeted users from a pool of candidates for non-expert marketers, has garnered substantial attention with the advancements in digital marketing. However, existing user targeting methods encounter two significant challenges: (i) Poor cross-domain and cross-scenario transferability and generalization, and (ii) Insufficient forecastability in real-world applications. These limitations hinder their applicability across diverse industrial scenarios. In this work, we propose FOUND, an industrial-grade, transferable, and forecastable user targeting foundation model. To enhance cross-domain transferability, our framework integrates heterogeneous multi-scenario user data, aligning them with one-sentence targeting demand inputs through contrastive pre-training. For improved forecastability, the text description of each user is derived based on anticipated future behaviors, while user representations are constructed from historical information. Experimental results demonstrate that our approach significantly outperforms existing baselines in cross-domain, real-world user targeting scenarios, showcasing the superior capabilities of FOUND. Moreover, our method has been successfully deployed on the Alipay platform and is widely utilized across various scenarios.

Runlin Lei, Jiarui Ji, Haipeng Ding et al.

With the rise of large language models (LLMs), there has been growing interest in Graph Foundation Models (GFMs) for graph-based tasks. By leveraging LLMs as predictors, GFMs have demonstrated impressive generalizability across various tasks and datasets. However, existing research on LLMs as predictors has predominantly focused on static graphs, leaving their potential in dynamic graph prediction unexplored. In this work, we pioneer using LLMs for predictive tasks on dynamic graphs. We identify two key challenges: the constraints imposed by context length when processing large-scale historical data and the significant variability in domain characteristics, both of which complicate the development of a unified predictor. To address these challenges, we propose the GraphAgent-Dynamic (GAD) Framework, a multi-agent system that leverages collaborative LLMs. In contrast to using a single LLM as the predictor, GAD incorporates global and local summary agents to generate domain-specific knowledge, enhancing its transferability across domains. Additionally, knowledge reflection agents enable adaptive updates to GAD's knowledge, maintaining a unified and self-consistent architecture. In experiments, GAD demonstrates performance comparable to or even exceeds that of full-supervised graph neural networks without dataset-specific training. Finally, to enhance the task-specific performance of LLM-based predictors, we discuss potential improvements, such as dataset-specific fine-tuning to LLMs. By developing tailored strategies for different tasks, we provide new insights for the future design of LLM-based predictors.

Sheng Tian, Xintan Zeng, Yifei Hu et al.

Graph-based patterns are extensively employed and favored by practitioners within industrial companies due to their capacity to represent the behavioral attributes and topological relationships among users, thereby offering enhanced interpretability in comparison to black-box models commonly utilized for classification and recognition tasks. For instance, within the scenario of transaction risk management, a graph pattern that is characteristic of a particular risk category can be readily employed to discern transactions fraught with risk, delineate networks of criminal activity, or investigate the methodologies employed by fraudsters. Nonetheless, graph data in industrial settings is often characterized by its massive scale, encompassing data sets with millions or even billions of nodes, making the manual extraction of graph patterns not only labor-intensive but also necessitating specialized knowledge in particular domains of risk. Moreover, existing methodologies for mining graph patterns encounter significant obstacles when tasked with analyzing large-scale attributed graphs. In this work, we introduce GraphRPM, an industry-purpose parallel and distributed risk pattern mining framework on large attributed graphs. The framework incorporates a novel edge-involved graph isomorphism network alongside optimized operations for parallel graph computation, which collectively contribute to a considerable reduction in computational complexity and resource expenditure. Moreover, the intelligent filtration of efficacious risky graph patterns is facilitated by the proposed evaluation metrics. Comprehensive experimental evaluations conducted on real-world datasets of varying sizes substantiate the capability of GraphRPM to adeptly address the challenges inherent in mining patterns from large-scale industrial attributed graphs, thereby underscoring its substantial value for industrial deployment.

Yunhui Liu, Yongchao Liu, Yinfeng Chen et al.

Hierarchical knowledge structures are ubiquitous across real-world domains and play a vital role in organizing information from coarse to fine semantic levels. While such structures have been widely used in taxonomy systems, biomedical ontologies, and retrieval-augmented generation, their potential remains underexplored in the context of Text-Rich Networks (TRNs), where each node contains rich textual content and edges encode semantic relationships. Existing methods for learning on TRNs often focus on flat semantic modeling, overlooking the inherent hierarchical semantics embedded in textual documents. To this end, we propose TIER (Hierarchical \textbf{T}axonomy-\textbf{I}nformed R\textbf{E}presentation Learning on Text-\textbf{R}ich Networks), which first constructs an implicit hierarchical taxonomy and then integrates it into the learned node representations. Specifically, TIER employs similarity-guided contrastive learning to build a clustering-friendly embedding space, upon which it performs hierarchical K-Means followed by LLM-powered clustering refinement to enable semantically coherent taxonomy construction. Leveraging the resulting taxonomy, TIER introduces a cophenetic correlation coefficient-based regularization loss to align the learned embeddings with the hierarchical structure. By learning representations that respect both fine-grained and coarse-grained semantics, TIER enables more interpretable and structured modeling of real-world TRNs. We demonstrate that our approach significantly outperforms existing methods on multiple datasets across diverse domains, highlighting the importance of hierarchical knowledge learning for TRNs.

Chuan He, Yongchao Liu, Qiang Li et al.

Cold-start item recommendation is a significant challenge in recommendation systems, particularly when new items are introduced without any historical interaction data. While existing methods leverage multi-modal content to alleviate the cold-start issue, they often neglect the inherent multi-view structure of modalities, the distinction between shared and modality-specific features. In this paper, we propose Multi-Modal Multi-View Variational AutoEncoder (M^2VAE), a generative model that addresses the challenges of modeling common and unique views in attribute and multi-modal features, as well as user preferences over single-typed item features. Specifically, we generate type-specific latent variables for item IDs, categorical attributes, and image features, and use Product-of-Experts (PoE) to derive a common representation. A disentangled contrastive loss decouples the common view from unique views while preserving feature informativeness. To model user inclinations, we employ a preference-guided Mixture-of-Experts (MoE) to adaptively fuse representations. We further incorporate co-occurrence signals via contrastive learning, eliminating the need for pretraining. Extensive experiments on real-world datasets validate the effectiveness of our approach.

Chuan He, Yang Chen, Wuliang Huang et al.

Multi-source user representation learning plays a critical role in enabling personalized services on web platforms (e.g., Alipay). While prior works have adopted late-fusion strategies to combine heterogeneous data sources, they suffer from three key limitations: lack of unified representation frameworks, scalability and storage issues in data compression, and inflexible cross-task generalization. To address these challenges, we propose U2QT (Unified User Quantized Tokenizers), a novel framework that integrates cross-domain knowledge transfer with early fusion of heterogeneous domains. Our framework employs a two-stage architecture: first, we use the Qwen3 Embedding model to derive a compact yet expressive feature representation; second, a multi-view RQ-VAE discretizes causal embeddings into compact tokens through shared and source-specific codebooks, enabling efficient storage while maintaining semantic coherence. Experimental results showcase U2QT's advantages across diverse downstream tasks, outperforming task-specific baselines in future behavior prediction and recommendation tasks while achieving efficiency gains in storage and computation. The unified tokenization framework enables seamless integration with language models and supports industrial-scale applications.

Yue Jin, Yongchao Liu, Chuntao Hong

Graph-based computations are crucial in a wide range of applications, where graphs can scale to trillions of edges. To enable efficient training on such large graphs, mini-batch subgraph sampling is commonly used, which allows training without loading the entire graph into memory. However, existing solutions face significant trade-offs: online subgraph generation, as seen in frameworks like DGL and PyG, is limited to a single machine, resulting in severe performance bottlenecks, while offline precomputed subgraphs, as in GraphGen, improve sampling efficiency but introduce large storage overhead and high I/O costs during training. To address these challenges, we propose \textbf{GraphGen+}, an integrated framework that synchronizes distributed subgraph generation with in-memory graph learning, eliminating the need for external storage while significantly improving efficiency. GraphGen+ achieves a \textbf{27$\times$} speedup in subgraph generation compared to conventional SQL-like methods and a \textbf{1.3$\times$} speedup over GraphGen, supporting training on 1 million nodes per iteration and removing the overhead associated with precomputed subgraphs, making it a scalable and practical solution for industry-scale graph learning.

Xiabao Wu, Yongchao Liu, Wei Qin et al.

Graph neural networks (GNNs) have delivered remarkable results in various fields. However, the rapid increase in the scale of graph data has introduced significant performance bottlenecks for GNN inference. Both computational complexity and memory usage have risen dramatically, with memory becoming a critical limitation. Although graph sampling-based subgraph learning methods can help mitigate computational and memory demands, they come with drawbacks such as information loss and high redundant computation among subgraphs. This paper introduces an innovative processing paradgim for distributed graph learning that abstracts GNNs with a new set of programming interfaces and leverages Just-In-Time (JIT) compilation technology to its full potential. This paradigm enables GNNs to highly exploit the computational resources of distributed clusters by eliminating the drawbacks of subgraph learning methods, leading to a more efficient inference process. Our experimental results demonstrate that on industry-scale graphs of up to \textbf{500 million nodes and 22.4 billion edges}, our method can produce a performance boost of up to \textbf{27.4 times}.