41.8DMApr 28
Robustness of Boolean networks to update modes: an application to hereditary angioedemaJacques Demongeot, Eric Goles, Houssem ben Khalfallah et al.
Many familial diseases are caused by genetic accidents, which affect both the genome and its epigenetic environment, expressed as an interaction graph between the genes as that involved in one familial disease we shall study, the hereditary angioedema. The update of the gene states at the vertices of this graph (1 if a gene is activated, 0 if it is inhibited) can be done in multiple ways, well studied over the last two decades: Parallel, sequential, block-sequential, block-parallel, random, etc. We will study a particular graph, related to the familial disease proposed as an example, which has subgraphs which activate in an intricate manner (\emph{i.e.}, in an alternating block-parallel mode, with one core constantly updated and two complementary subsets of genes alternating their updating), of which we will study the structural aspects, robust or unstable, in relation to some classical periodic update modes.
57.2CCApr 16
Complexity of Fungal Automaton PredictionEnrico Formenti, Eric Goles, Kévin Perrot et al.
Fungal automata are a nature-inspired computational model, where a rule is alternatively applied verticaly and horizontaly. In this work we study the computational complexity of predicting the dynamics of all fungal freezing totalistic one-dimentional rules of radius $1$, exhibiting various behaviors. Despite efficiently predictable in most cases (with non-deterministic logspace algorithms), a non-linear rule is left open to characterize. We further explore the freezing majority rule (which is totalistic), and prove that at radius $1.5$ it becomes $\mathbf{P}$-complete to predict.
CLOct 8, 2015
Automata networks for multi-party communication in the Naming GameJavier Vera, Pedro Montealegre, Eric Goles
The Naming Game has been studied to explore the role of self-organization in the development and negotiation of linguistic conventions. In this paper, we define an automata networks approach to the Naming Game. Two problems are faced: (1) the definition of an automata networks for multi-party communicative interactions; and (2) the proof of convergence for three different orders in which the individuals are updated (updating schemes). Finally, computer simulations are explored in two-dimensional lattices with the purpose to recover the main features of the Naming Game and to describe the dynamics under different updating schemes.
CLAug 7, 2015
Automata networks for memory loss effects in the formation of linguistic conventionsJavier Vera, Eric Goles
This work attempts to give new theoretical insights to the absence of intermediate stages in the evolution of language. In particular, it is developed an automata networks approach to a crucial question: how a population of language users can reach agreement on a linguistic convention? To describe the appearance of sharp transitions in the self-organization of language, it is adopted an extremely simple model of (working) memory. At each time step, language users simply loss part of their word-memories. Through computer simulations of low-dimensional lattices, it appear sharp transitions at critical values that depend on the size of the vicinities of the individuals.
CLAug 7, 2015
Automata networks model for alignment and least effort on vocabulary formationJavier Vera, Felipe Urbina, Eric Goles
Can artificial communities of agents develop language with scaling relations close to the Zipf law? As a preliminary answer to this question, we propose an Automata Networks model of the formation of a vocabulary on a population of individuals, under two in principle opposite strategies: the alignment and the least effort principle. Within the previous account to the emergence of linguistic conventions (specially, the Naming Game), we focus on modeling speaker and hearer efforts as actions over their vocabularies and we study the impact of these actions on the formation of a shared language. The numerical simulations are essentially based on an energy function, that measures the amount of local agreement between the vocabularies. The results suggests that on one dimensional lattices the best strategy to the formation of shared languages is the one that minimizes the efforts of speakers on communicative tasks.