Tariq M. Khan

Muhammad Usman, Azka Rehman, Abd Ur Rehman et al. · stanford

Accurate lung nodule segmentation is crucial for early-stage lung cancer diagnosis, as it can substantially enhance patient survival rates. Computed tomography (CT) images are widely employed for early diagnosis in lung nodule analysis. However, the heterogeneity of lung nodules, size diversity, and the complexity of the surrounding environment pose challenges for developing robust nodule segmentation methods. In this study, we propose an efficient end-to-end framework, the multi-encoder-based self-adaptive hard attention network (MESAHA-Net), for precise lung nodule segmentation in CT scans. MESAHA-Net comprises three encoding paths, an attention block, and a decoder block, facilitating the integration of three types of inputs: CT slice patches, forward and backward maximum intensity projection (MIP) images, and region of interest (ROI) masks encompassing the nodule. By employing a novel adaptive hard attention mechanism, MESAHA-Net iteratively performs slice-by-slice 2D segmentation of lung nodules, focusing on the nodule region in each slice to generate 3D volumetric segmentation of lung nodules. The proposed framework has been comprehensively evaluated on the LIDC-IDRI dataset, the largest publicly available dataset for lung nodule segmentation. The results demonstrate that our approach is highly robust for various lung nodule types, outperforming previous state-of-the-art techniques in terms of segmentation accuracy and computational complexity, rendering it suitable for real-time clinical implementation.

Tariq M. Khan, Muhammad Arsalan, Shahzaib Iqbal et al.

Diseases such as diabetic retinopathy and age-related macular degeneration pose a significant risk to vision, highlighting the importance of precise segmentation of retinal vessels for the tracking and diagnosis of progression. However, existing vessel segmentation methods that heavily rely on encoder-decoder structures struggle to capture contextual information about retinal vessel configurations, leading to challenges in reconciling semantic disparities between encoder and decoder features. To address this, we propose a novel feature enhancement segmentation network (FES-Net) that achieves accurate pixel-wise segmentation without requiring additional image enhancement steps. FES-Net directly processes the input image and utilizes four prompt convolutional blocks (PCBs) during downsampling, complemented by a shallow upsampling approach to generate a binary mask for each class. We evaluate the performance of FES-Net on four publicly available state-of-the-art datasets: DRIVE, STARE, CHASE, and HRF. The evaluation results clearly demonstrate the superior performance of FES-Net compared to other competitive approaches documented in the existing literature.

Shahzaib Iqbal, Muhammad Zeeshan, Mehwish Mehmood et al.

Early detection of skin cancer relies on precise segmentation of dermoscopic images of skin lesions. However, this task is challenging due to the irregular shape of the lesion, the lack of sharp borders, and the presence of artefacts such as marker colours and hair follicles. Recent methods for melanoma segmentation are U-Nets and fully connected networks (FCNs). As the depth of these neural network models increases, they can face issues like the vanishing gradient problem and parameter redundancy, potentially leading to a decrease in the Jaccard index of the segmentation model. In this study, we introduced a novel network named TESL-Net for the segmentation of skin lesions. The proposed TESL-Net involves a hybrid network that combines the local features of a CNN encoder-decoder architecture with long-range and temporal dependencies using bi-convolutional long-short-term memory (Bi-ConvLSTM) networks and a Swin transformer. This enables the model to account for the uncertainty of segmentation over time and capture contextual channel relationships in the data. We evaluated the efficacy of TESL-Net in three commonly used datasets (ISIC 2016, ISIC 2017, and ISIC 2018) for the segmentation of skin lesions. The proposed TESL-Net achieves state-of-the-art performance, as evidenced by a significantly elevated Jaccard index demonstrated by empirical results.

Mahrukh Siddiqui, Shahzaib Iqbal, Bandar AlShammari et al.

Compared to contact fingerprint images, contactless fingerprint images exhibit four distinct characteristics: (1) they contain less noise; (2) they have fewer discontinuities in ridge patterns; (3) the ridge-valley pattern is less distinct; and (4) they pose an interoperability problem, as they lack the elastic deformation caused by pressing the finger against the capture device. These properties present significant challenges for the enhancement of contactless fingerprint images. In this study, we propose a novel contactless fingerprint identification solution that enhances the accuracy of minutiae detection through improved frequency estimation and a new region-quality-based minutia extraction algorithm. In addition, we introduce an efficient and highly accurate minutiae-based encoding and matching algorithm. We validate the effectiveness of our approach through extensive experimental testing. Our method achieves a minimum Equal Error Rate (EER) of 2.84\% on the PolyU contactless fingerprint dataset, demonstrating its superior performance compared to existing state-of-the-art techniques. The proposed fingerprint identification method exhibits notable precision and resilience, proving to be an effective and feasible solution for contactless fingerprint-based identification systems.

Mufassir M. Abbasi, Shahzaib Iqbal, Asim Naveed et al.

Blinding eye diseases are often correlated with altered retinal morphology, which can be clinically identified by segmenting retinal structures in fundus images. However, current methodologies often fall short in accurately segmenting delicate vessels. Although deep learning has shown promise in medical image segmentation, its reliance on repeated convolution and pooling operations can hinder the representation of edge information, ultimately limiting overall segmentation accuracy. In this paper, we propose a lightweight pixel-level CNN named LMBiS-Net for the segmentation of retinal vessels with an exceptionally low number of learnable parameters \textbf{(only 0.172 M)}. The network used multipath feature extraction blocks and incorporates bidirectional skip connections for the information flow between the encoder and decoder. Additionally, we have optimized the efficiency of the model by carefully selecting the number of filters to avoid filter overlap. This optimization significantly reduces training time and enhances computational efficiency. To assess the robustness and generalizability of LMBiS-Net, we performed comprehensive evaluations on various aspects of retinal images. Specifically, the model was subjected to rigorous tests to accurately segment retinal vessels, which play a vital role in ophthalmological diagnosis and treatment. By focusing on the retinal blood vessels, we were able to thoroughly analyze the performance and effectiveness of the LMBiS-Net model. The results of our tests demonstrate that LMBiS-Net is not only robust and generalizable but also capable of maintaining high levels of segmentation accuracy. These characteristics highlight the potential of LMBiS-Net as an efficient tool for high-speed and accurate segmentation of retinal images in various clinical applications.

Shahzaib Iqbal, Tariq M. Khan, Syed S. Naqvi et al.

Deep learning has shown great potential for automated medical image segmentation to improve the precision and speed of disease diagnostics. However, the task presents significant difficulties due to variations in the scale, shape, texture, and contrast of the pathologies. Traditional convolutional neural network (CNN) models have certain limitations when it comes to effectively modelling multiscale context information and facilitating information interaction between skip connections across levels. To overcome these limitations, a novel deep learning architecture is introduced for medical image segmentation, taking advantage of CNNs and vision transformers. Our proposed model, named TBConvL-Net, involves a hybrid network that combines the local features of a CNN encoder-decoder architecture with long-range and temporal dependencies using biconvolutional long-short-term memory (LSTM) networks and vision transformers (ViT). This enables the model to capture contextual channel relationships in the data and account for the uncertainty of segmentation over time. Additionally, we introduce a novel composite loss function that considers both the segmentation robustness and the boundary agreement of the predicted output with the gold standard. Our proposed model shows consistent improvement over the state of the art on ten publicly available datasets of seven different medical imaging modalities.

Tariq M. Khan, Syed Saud Naqvi, Thantrira Porntaveetus et al.

Medical image segmentation is often framed as a search for stronger architectures, but this can obscure a more fundamental question: what does the dataset require from the model? In medical imaging, this requirement is shaped by foreground occupancy, morphology, boundary ambiguity, topology sensitivity, annotation quality, acquisition variation, and operating point. This paper introduces the Medical Segmentation Dataset Knowledge Card (MS-DKC), a framework for making these factors explicit. MS-DKC records dataset evidence through image/acquisition, morphology, supervision, context-dependence, and deployment-risk descriptors. These descriptors are mapped to failure modes, design priors, and risk-aligned criteria, making segmentation design more traceable than architecture-first comparison. We evaluate MS-DKC on DRIVE, ISIC2018, and ACDC, representing distinct regimes. DRIVE contains sparse, thin, branching vessels, favoring detail-preserving models, sensitivity-aware optimization, threshold analysis, and topology-aware metrics. DKC-TNet-v2 achieved Dice 0.8044 and IoU 0.6730 with 35103 parameters, while SA-UNetv2-DKC-AmbRef reached Dice 0.8141, IoU 0.6865, sensitivity 0.8265, specificity 0.9804, and AUC 0.9853. ISIC2018 involves compact but appearance-variable lesions; validation-constrained score-function selection on Att-Next-Topo/ATTNext produced MS-DKC-AttNextTopo-VCSF-NoAug with Dice 0.8872, IoU 0.8214, precision 0.9173, Boundary F1 0.4878, and ASSD 4.13, while plausible additions failed to improve the risk-aligned profile. ACDC provides a multi-class cardiac case, where MS-DKC recommends four-class softmax segmentation, class-balanced Dice/CE supervision, and class-wise surface evaluation. Overall, the results support dataset-conditioned design: different datasets require different priors, operating points, and evidence before a model can be judged appropriate.

Tariq M. Khan, Antonio Robles-Kelly

In this paper, we present a gradient-free approach for training multi-layered neural networks based upon quantum perceptrons. Here, we depart from the classical perceptron and the elemental operations on quantum bits, i.e. qubits, so as to formulate the problem in terms of quantum perceptrons. We then make use of measurable operators to define the states of the network in a manner consistent with a Markov process. This yields a Dirac-Von Neumann formulation consistent with quantum mechanics. Moreover, the formulation presented here has the advantage of having a computational efficiency devoid of the number of layers in the network. This, paired with the natural efficiency of quantum computing, can imply a significant improvement in efficiency, particularly for deep networks. Finally, but not least, the developments here are quite general in nature since the approach presented here can also be used for quantum-inspired neural networks implemented on conventional computers.