Hind Zantout

Lubna M. Abu Zohair, Marta Vallejo, MD Azher Uddin et al.

Huntington's disease (HD) is a progressive brain disorder that gradually affects movement, cognitive function, and behavior. Identifying the stage of the disease accurately and consistently is important for understanding its course, grouping patients, personalized care, and discovering treatment. Existing clinical staging frameworks rely primarily on predefined clinical measurement thresholds and clinical expert decisions, yet these discrete cut-offs may obscure meaningful intra-stage variability and remain vulnerable to inter-rater differences, especially in motor and functional assessments. To address these limitations, we developed an unsupervised machine learning framework based on dynamic graph representation learning to capture temporal relationships within and across patients from longitudinal clinical measurements. Using the learned representations, we applied K-means++ clustering to identify well-separated groups. We then iteratively increased the number of clusters (k), using stability analysis to assess robustness and reveal additional meaningful clusters beyond the initial optimal solution. We applied the framework to 302 individuals from the Enroll-HD cohort (1,477 visits, 44 clinical variables per visit; 80% manifest participants), enabling data-driven discovery of HD stages reflecting natural clinical progression. Despite the limited cohort size, the proposed framework achieved robust clustering performance using a four-dimensional latent space, identifying four meaningful and statistically distinct disease stages through clustering stability analysis. Each stage corresponded to well-defined clinical measurement boundaries, with minimal overlap compared to previously established clinical staging methods.

Ali Muzaffar, Hani Ragab Hassen, Hind Zantout et al.

We report the findings of a reimplementation of 18 foundational studies in feature-based machine learning for Android malware detection, published during the period 2013-2023. These studies are reevaluated on a level playing field using a contemporary Android environment and a balanced dataset of 124,000 applications. Our findings show that feature-based approaches can still achieve detection accuracies beyond 98%, despite a considerable increase in the size of the underlying Android feature sets. We observe that features derived through dynamic analysis yield only a small benefit over those derived from static analysis, and that simpler models often out-perform more complex models. We also find that API calls and opcodes are the most productive static features within our evaluation context, network traffic is the most predictive dynamic feature, and that ensemble models provide an efficient means of combining models trained on static and dynamic features. Together, these findings suggest that simple, fast machine learning approaches can still be an effective basis for malware detection, despite the increasing focus on slower, more expensive machine learning models in the literature.

Smitha S Kumar, Michael A Lones, Manuel Maarek et al.

Large Language Models have introduced new possibilities for programming education through personalized support, content creation, and automated feedback. While recent studies have demonstrated the potential for feedback generation, many techniques rely on proprietary models, raising concerns about cost, computational demands, and the ethical implications of sharing student code. Open LLMs provide an alternative approach, but they do not currently have the capabilities of proprietary models. To address this problem, we investigate whether parameter-efficient fine-tuning (PEFT) and prompt engineering, both of which distil knowledge from a dataset derived from a large, more capable model, can be used to adapt and enhance the quality of feedback generated by the open LLM Code Llama. Feedback quality on buggy Java code was assessed using a combination of student evaluation, manual annotation and the automated metrics BLEU, ROUGE, and BERTScore. Our findings indicate that PEFT leads to notable improvements in feedback quality and significantly outperforms prompt engineering, providing an avenue for developing freely deployable feedback tools that can be effectively used to guide student learning. Student evaluation indicates that learners value the PEFT model's feedback and see it as being equally effective as the proprietary ChatGPT model. Participants suggested that incorporating additional explanation for technical terms in the PEFT model's feedback could be more beneficial. This study demonstrates that fine-tuned models can effectively support critical thinking and guide the design of scalable pedagogical systems.

Heba El-Shimy, Hind Zantout, Michael A. Lones et al.

Deep learning techniques are increasingly being adopted in diagnostic medical imaging. However, the limited availability of high-quality, large-scale medical datasets presents a significant challenge, often necessitating the use of transfer learning approaches. This study investigates self-supervised learning methods for pre-training capsule networks in polyp diagnostics for colon cancer. We used the PICCOLO dataset, comprising 3,433 samples, which exemplifies typical challenges in medical datasets: small size, class imbalance, and distribution shifts between data splits. Capsule networks offer inherent interpretability due to their architecture and inter-layer information routing mechanism. However, their limited native implementation in mainstream deep learning frameworks and the lack of pre-trained versions pose a significant challenge. This is particularly true if aiming to train them on small medical datasets, where leveraging pre-trained weights as initial parameters would be beneficial. We explored two auxiliary self-supervised learning tasks, colourisation and contrastive learning, for capsule network pre-training. We compared self-supervised pre-trained models against alternative initialisation strategies. Our findings suggest that contrastive learning and in-painting techniques are suitable auxiliary tasks for self-supervised learning in the medical domain. These techniques helped guide the model to capture important visual features that are beneficial for the downstream task of polyp classification, increasing its accuracy by 5.26% compared to other weight initialisation methods.

Ali Muzaffar, Hani Ragab Hassen, Hind Zantout et al.

The growing popularity of Android requires malware detection systems that can keep up with the pace of new software being released. According to a recent study, a new piece of malware appears online every 12 seconds. To address this, we treat Android malware detection as a streaming data problem and explore the use of active online learning as a means of mitigating the problem of labelling applications in a timely and cost-effective manner. Our resulting framework achieves accuracies of up to 96\%, requires as little of 24\% of the training data to be labelled, and compensates for concept drift that occurs between the release and labelling of an application. We also consider the broader practicalities of online learning within Android malware detection, and systematically explore the trade-offs between using different static, dynamic and hybrid feature sets to classify malware.

Smitha Kumar, Michael A. Lones, Manuel Maarek et al.

The rapid advancement of Large Language Models (LLMs) has opened new avenues in education. This study examines the use of LLMs in supporting learning in machine learning education; in particular, it focuses on the ability of LLMs to identify common errors of practice (pitfalls) in machine learning code, and their ability to provide feedback that can guide learning. Using a portfolio of code samples, we consider four different LLMs: one closed model and three open models. Whilst the most basic pitfalls are readily identified by all models, many common pitfalls are not. They particularly struggle to identify pitfalls in the early stages of the ML pipeline, especially those which can lead to information leaks, a major source of failure within applied ML projects. They also exhibit limited success at identifying pitfalls around model selection, which is a concept that students often struggle with when first transitioning from theory to practice. This questions the use of current LLMs to support machine learning education, and also raises important questions about their use by novice practitioners. Nevertheless, when LLMs successfully identify pitfalls in code, they do provide feedback that includes advice on how to proceed, emphasising their potential role in guiding learners. We also compare the capability of closed and open LLM models, and find that the gap is relatively small given the large difference in model sizes. This presents an opportunity to deploy, and potentially customise, smaller more efficient LLM models within education, avoiding risks around cost and data sharing associated with commercial models.