Sergey Kozlov

2papers

2 Papers

26.3MTRL-SCIMay 3
Meta-LegNet: A Transferable and Interpretable Framework for Surface Adsorption Prediction via Self-Defined Adsorption-Environment Learning

Yifan Li, Arravind Subramanian, Xiaoqing Liu et al.

A central challenge in computational catalysis is the identification of low-energy and chemically plausible adsorption configurations, as these directly affect adsorption energies, reaction pathways, and catalytic performance. Existing approaches generally rely on enumerating candidate adsorption sites followed by iterative refinement through density functional theory calculations or machine-learning-based relaxations. However, such workflows remain computationally expensive and are difficult to scale to complex surfaces or multi-adsorbate systems. Here, we introduce Meta-LegNet, a graph learning framework that combines SE(3)-equivariant atom-level message passing with voxel-based multiscale aggregation and cross-domain meta-learning to learn transferable representations of local adsorption environments across diverse catalyst--adsorbate systems. Rather than following a conventional regression-only paradigm, Meta-LegNet encodes local chemical environments using invariant radial features and equivariant directional information, and further incorporates broader structural context through coordinate-frame voxel pooling, assignment-based upsampling, and gated feature fusion. The resulting local-global decomposition produces atom-resolved attribution maps, which are processed to identify adsorption-relevant local environments in an interpretable manner. Based on the learned representations, we further construct an adsorption-environment database and develop a template-matching strategy to propose likely adsorption sites on previously unexplored surfaces without exhaustive site enumeration. Overall, our results suggest that learning transferable adsorption environments provides an accurate, interpretable, and practical route for accelerating catalyst screening.

SEJan 30, 2017
Auto-Documenation for Software Development

Thomas Zheng, Jeff Shaw, Sergey Kozlov

Software documentation is an essential but labor intensive task that often requires a dedicated team of developers to ensure coverage and accuracy. Good documentation will help shorten the development cycle and improve the overall team efficiency as well as maintainability. In today's crowd-driven development environment, good documentation can go a long way in building a developer community from scratch. To that end, we took the first steps in building a tool called Autodoc that can assist software developers in writing better documentation faster. Autodoc goes beyond traditional boilerplate template generation. Our integrated tool uses Deep Learning methods to construct a semantic understanding of the code. Just like machine translation in natural languages, Autodoc can translate snippets of code to comments, and insert them as short summaries inside the docstring. We also demonstrate the integration of Autodoc as an IDE plugin as well as a web hook from within software hosting platforms when submitting auto-documented code to user's Git repository.