Khemraj Shukla

LG
Semantic Scholar Profile
h-index142
28papers
1,271citations
Novelty47%
AI Score54

28 Papers

LGJul 23, 2023
Tackling the Curse of Dimensionality with Physics-Informed Neural Networks

Zheyuan Hu, Khemraj Shukla, George Em Karniadakis et al.

The curse-of-dimensionality taxes computational resources heavily with exponentially increasing computational cost as the dimension increases. This poses great challenges in solving high-dimensional PDEs, as Richard E. Bellman first pointed out over 60 years ago. While there has been some recent success in solving numerically partial differential equations (PDEs) in high dimensions, such computations are prohibitively expensive, and true scaling of general nonlinear PDEs to high dimensions has never been achieved. We develop a new method of scaling up physics-informed neural networks (PINNs) to solve arbitrary high-dimensional PDEs. The new method, called Stochastic Dimension Gradient Descent (SDGD), decomposes a gradient of PDEs into pieces corresponding to different dimensions and randomly samples a subset of these dimensional pieces in each iteration of training PINNs. We prove theoretically the convergence and other desired properties of the proposed method. We demonstrate in various diverse tests that the proposed method can solve many notoriously hard high-dimensional PDEs, including the Hamilton-Jacobi-Bellman (HJB) and the Schrödinger equations in tens of thousands of dimensions very fast on a single GPU using the PINNs mesh-free approach. Notably, we solve nonlinear PDEs with nontrivial, anisotropic, and inseparable solutions in 100,000 effective dimensions in 12 hours on a single GPU using SDGD with PINNs. Since SDGD is a general training methodology of PINNs, it can be applied to any current and future variants of PINNs to scale them up for arbitrary high-dimensional PDEs.

MTRL-SCIApr 11, 2022
Learning two-phase microstructure evolution using neural operators and autoencoder architectures

Vivek Oommen, Khemraj Shukla, Somdatta Goswami et al.

Phase-field modeling is an effective but computationally expensive method for capturing the mesoscale morphological and microstructure evolution in materials. Hence, fast and generalizable surrogate models are needed to alleviate the cost of computationally taxing processes such as in optimization and design of materials. The intrinsic discontinuous nature of the physical phenomena incurred by the presence of sharp phase boundaries makes the training of the surrogate model cumbersome. We develop a framework that integrates a convolutional autoencoder architecture with a deep neural operator (DeepONet) to learn the dynamic evolution of a two-phase mixture and accelerate time-to-solution in predicting the microstructure evolution. We utilize the convolutional autoencoder to provide a compact representation of the microstructure data in a low-dimensional latent space. DeepONet, which consists of two sub-networks, one for encoding the input function at a fixed number of sensors locations (branch net) and another for encoding the locations for the output functions (trunk net), learns the mesoscale dynamics of the microstructure evolution from the autoencoder latent space. The decoder part of the convolutional autoencoder then reconstructs the time-evolved microstructure from the DeepONet predictions. The trained DeepONet architecture can then be used to replace the high-fidelity phase-field numerical solver in interpolation tasks or to accelerate the numerical solver in extrapolation tasks.

QMSep 29, 2023
AI-Aristotle: A Physics-Informed framework for Systems Biology Gray-Box Identification

Nazanin Ahmadi Daryakenari, Mario De Florio, Khemraj Shukla et al.

Discovering mathematical equations that govern physical and biological systems from observed data is a fundamental challenge in scientific research. We present a new physics-informed framework for parameter estimation and missing physics identification (gray-box) in the field of Systems Biology. The proposed framework -- named AI-Aristotle -- combines eXtreme Theory of Functional Connections (X-TFC) domain-decomposition and Physics-Informed Neural Networks (PINNs) with symbolic regression (SR) techniques for parameter discovery and gray-box identification. We test the accuracy, speed, flexibility and robustness of AI-Aristotle based on two benchmark problems in Systems Biology: a pharmacokinetics drug absorption model, and an ultradian endocrine model for glucose-insulin interactions. We compare the two machine learning methods (X-TFC and PINNs), and moreover, we employ two different symbolic regression techniques to cross-verify our results. While the current work focuses on the performance of AI-Aristotle based on synthetic data, it can equally handle noisy experimental data and can even be used for black-box identification in just a few minutes on a laptop. More broadly, our work provides insights into the accuracy, cost, scalability, and robustness of integrating neural networks with symbolic regressors, offering a comprehensive guide for researchers tackling gray-box identification challenges in complex dynamical systems in biomedicine and beyond.

LGMay 16, 2022
Scalable algorithms for physics-informed neural and graph networks

Khemraj Shukla, Mengjia Xu, Nathaniel Trask et al.

Physics-informed machine learning (PIML) has emerged as a promising new approach for simulating complex physical and biological systems that are governed by complex multiscale processes for which some data are also available. In some instances, the objective is to discover part of the hidden physics from the available data, and PIML has been shown to be particularly effective for such problems for which conventional methods may fail. Unlike commercial machine learning where training of deep neural networks requires big data, in PIML big data are not available. Instead, we can train such networks from additional information obtained by employing the physical laws and evaluating them at random points in the space-time domain. Such physics-informed machine learning integrates multimodality and multifidelity data with mathematical models, and implements them using neural networks or graph networks. Here, we review some of the prevailing trends in embedding physics into machine learning, using physics-informed neural networks (PINNs) based primarily on feed-forward neural networks and automatic differentiation. For more complex systems or systems of systems and unstructured data, graph neural networks (GNNs) present some distinct advantages, and here we review how physics-informed learning can be accomplished with GNNs based on graph exterior calculus to construct differential operators; we refer to these architectures as physics-informed graph networks (PIGNs). We present representative examples for both forward and inverse problems and discuss what advances are needed to scale up PINNs, PIGNs and more broadly GNNs for large-scale engineering problems.

LGJul 30, 2024
NeuroSEM: A hybrid framework for simulating multiphysics problems by coupling PINNs and spectral elements

Khemraj Shukla, Zongren Zou, Chi Hin Chan et al.

Multiphysics problems that are characterized by complex interactions among fluid dynamics, heat transfer, structural mechanics, and electromagnetics, are inherently challenging due to their coupled nature. While experimental data on certain state variables may be available, integrating these data with numerical solvers remains a significant challenge. Physics-informed neural networks (PINNs) have shown promising results in various engineering disciplines, particularly in handling noisy data and solving inverse problems in partial differential equations (PDEs). However, their effectiveness in forecasting nonlinear phenomena in multiphysics regimes, particularly involving turbulence, is yet to be fully established. This study introduces NeuroSEM, a hybrid framework integrating PINNs with the high-fidelity Spectral Element Method (SEM) solver, Nektar++. NeuroSEM leverages the strengths of both PINNs and SEM, providing robust solutions for multiphysics problems. PINNs are trained to assimilate data and model physical phenomena in specific subdomains, which are then integrated into the Nektar++ solver. We demonstrate the efficiency and accuracy of NeuroSEM for thermal convection in cavity flow and flow past a cylinder. We applied NeuroSEM to the Rayleigh-Bénard convection system, including cases with missing thermal boundary conditions and noisy datasets, and to real particle image velocimetry (PIV) data to capture flow patterns characterized by horseshoe vortical structures. The framework's plug-and-play nature facilitates its extension to other multiphysics or multiscale problems. Furthermore, NeuroSEM is optimized for efficient execution on emerging integrated GPU-CPU architectures. This hybrid approach enhances the accuracy and efficiency of simulations, making it a powerful tool for tackling complex engineering challenges in various scientific domains.

FLU-DYNFeb 2, 2023
Deep neural operators can serve as accurate surrogates for shape optimization: A case study for airfoils

Khemraj Shukla, Vivek Oommen, Ahmad Peyvan et al.

Deep neural operators, such as DeepONets, have changed the paradigm in high-dimensional nonlinear regression from function regression to (differential) operator regression, paving the way for significant changes in computational engineering applications. Here, we investigate the use of DeepONets to infer flow fields around unseen airfoils with the aim of shape optimization, an important design problem in aerodynamics that typically taxes computational resources heavily. We present results which display little to no degradation in prediction accuracy, while reducing the online optimization cost by orders of magnitude. We consider NACA airfoils as a test case for our proposed approach, as their shape can be easily defined by the four-digit parametrization. We successfully optimize the constrained NACA four-digit problem with respect to maximizing the lift-to-drag ratio and validate all results by comparing them to a high-order CFD solver. We find that DeepONets have low generalization error, making them ideal for generating solutions of unseen shapes. Specifically, pressure, density, and velocity fields are accurately inferred at a fraction of a second, hence enabling the use of general objective functions beyond the maximization of the lift-to-drag ratio considered in the current work.

LGJun 27, 2023
MyCrunchGPT: A chatGPT assisted framework for scientific machine learning

Varun Kumar, Leonard Gleyzer, Adar Kahana et al.

Scientific Machine Learning (SciML) has advanced recently across many different areas in computational science and engineering. The objective is to integrate data and physics seamlessly without the need of employing elaborate and computationally taxing data assimilation schemes. However, preprocessing, problem formulation, code generation, postprocessing and analysis are still time consuming and may prevent SciML from wide applicability in industrial applications and in digital twin frameworks. Here, we integrate the various stages of SciML under the umbrella of ChatGPT, to formulate MyCrunchGPT, which plays the role of a conductor orchestrating the entire workflow of SciML based on simple prompts by the user. Specifically, we present two examples that demonstrate the potential use of MyCrunchGPT in optimizing airfoils in aerodynamics, and in obtaining flow fields in various geometries in interactive mode, with emphasis on the validation stage. To demonstrate the flow of the MyCrunchGPT, and create an infrastructure that can facilitate a broader vision, we built a webapp based guided user interface, that includes options for a comprehensive summary report. The overall objective is to extend MyCrunchGPT to handle diverse problems in computational mechanics, design, optimization and controls, and general scientific computing tasks involved in SciML, hence using it as a research assistant tool but also as an educational tool. While here the examples focus in fluid mechanics, future versions will target solid mechanics and materials science, geophysics, systems biology and bioinformatics.

AO-PHFeb 7, 2023
Learning bias corrections for climate models using deep neural operators

Aniruddha Bora, Khemraj Shukla, Shixuan Zhang et al.

Numerical simulation for climate modeling resolving all important scales is a computationally taxing process. Therefore, to circumvent this issue a low resolution simulation is performed, which is subsequently corrected for bias using reanalyzed data (ERA5), known as nudging correction. The existing implementation for nudging correction uses a relaxation based method for the algebraic difference between low resolution and ERA5 data. In this study, we replace the bias correction process with a surrogate model based on the Deep Operator Network (DeepONet). DeepONet (Deep Operator Neural Network) learns the mapping from the state before nudging (a functional) to the nudging tendency (another functional). The nudging tendency is a very high dimensional data albeit having many low energy modes. Therefore, the DeepoNet is combined with a convolution based auto-encoder-decoder (AED) architecture in order to learn the nudging tendency in a lower dimensional latent space efficiently. The accuracy of the DeepONet model is tested against the nudging tendency obtained from the E3SMv2 (Energy Exascale Earth System Model) and shows good agreement. The overarching goal of this work is to deploy the DeepONet model in an online setting and replace the nudging module in the E3SM loop for better efficiency and accuracy.

FLU-DYNJul 18, 2023
Characterization of partial wetting by CMAS droplets using multiphase many-body dissipative particle dynamics and data-driven discovery based on PINNs

Elham Kiyani, Mahdi Kooshkbaghi, Khemraj Shukla et al.

The molten sand, a mixture of calcia, magnesia, alumina, and silicate, known as CMAS, is characterized by its high viscosity, density, and surface tension. The unique properties of CMAS make it a challenging material to deal with in high-temperature applications, requiring innovative solutions and materials to prevent its buildup and damage to critical equipment. Here, we use multiphase many-body dissipative particle dynamics (mDPD) simulations to study the wetting dynamics of highly viscous molten CMAS droplets. The simulations are performed in three dimensions, with varying initial droplet sizes and equilibrium contact angles. We propose a coarse parametric ordinary differential equation (ODE) that captures the spreading radius behavior of the CMAS droplets. The ODE parameters are then identified based on the Physics-Informed Neural Network (PINN) framework. Subsequently, the closed form dependency of parameter values found by PINN on the initial radii and contact angles are given using symbolic regression. Finally, we employ Bayesian PINNs (B-PINNs) to assess and quantify the uncertainty associated with the discovered parameters. In brief, this study provides insight into spreading dynamics of CMAS droplets by fusing simple parametric ODE modeling and state-of-the-art machine learning techniques.

NAMay 24, 2019
A weight-adjusted discontinuous Galerkin method for the poroelastic wave equation: penalty fluxes and micro-heterogeneities

Khemraj Shukla, Jesse Chan, Maarten V. de Hoop et al.

We introduce a high-order weight-adjusted discontinuous Galerkin (WADG) scheme for the numerical solution of three-dimensional (3D) wave propagation problems in anisotropic porous media. We use a coupled first-order symmetric stress-velocity formulation. Careful attention is directed at (a) the derivation of an energy-stable penalty-based numerical flux, which offers high-order accuracy in presence of material discontinuities, and (b) proper treatment of micro-heterogeneities (sub-element variations) in the numerical scheme. The use of a penalty-based numerical flux avoids the diagonalization of Jacobian matrices into polarized wave constituents necessary when solving element-wise Riemann problems. Micro-heterogeneities are accurately and stably incorporated in the numerical scheme using easily-invertible weight-adjusted mass matrices. The convergence of the proposed numerical scheme is proven and verified by using convergence studies against analytical plane wave solutions. The proposed method is also compared against an existing implementation using the spectral element method to solve the poroelastic wave equation.

LGApr 18
Uncertainty Quantification in PINNs for Turbulent Flows: Bayesian Inference and Repulsive Ensembles

Khemraj Shukla, Zongren Zou, Theo Kaeufer et al.

Physics-informed neural networks (PINNs) have emerged as a promising framework for solving inverse problems governed by partial differential equations (PDEs), including the reconstruction of turbulent flow fields from sparse data. However, most existing PINN formulations are deterministic and do not provide reliable quantification of epistemic uncertainty, which is critical for ill-posed problems such as data-driven Reynolds-averaged Navier-Stokes (RANS) modeling. In this work, we develop and systematically evaluate a set of probabilistic extensions of PINNs for uncertainty quantification in turbulence modeling. The proposed framework combines (i) Bayesian PINNs with Hamiltonian Monte Carlo sampling and a tempered multi-component likelihood, (ii) Monte Carlo dropout, and (iii) repulsive deep ensembles that enforce diversity in function space. Particular emphasis is placed on the role of ensemble diversity and likelihood tempering in improving uncertainty calibration for PDE-constrained inverse problems. The methods are assessed on a hierarchy of test cases, including the Van der Pol oscillator and turbulent flow past a circular cylinder at Reynolds numbers Re=3,900 (direct numerical simulation data) and Re = 10,000 (experimental particle image velocimetry data). The results demonstrate that Bayesian PINNs provide the most consistent uncertainty estimates across all inferred quantities, while function-space repulsive ensembles offer a computationally efficient approximation with competitive accuracy for primary flow variables. These findings provide quantitative insight into the trade-offs between accuracy, computational cost, and uncertainty calibration in physics-informed learning, and offer practical guidance for uncertainty quantification in data-driven turbulence modeling.

LGApr 6
Curvature-Aware Optimization for High-Accuracy Physics-Informed Neural Networks

Anas Jnini, Elham Kiyani, Khemraj Shukla et al.

Efficient and robust optimization is essential for neural networks, enabling scientific machine learning models to converge rapidly to very high accuracy -- faithfully capturing complex physical behavior governed by differential equations. In this work, we present advanced optimization strategies to accelerate the convergence of physics-informed neural networks (PINNs) for challenging partial (PDEs) and ordinary differential equations (ODEs). Specifically, we provide efficient implementations of the Natural Gradient (NG) optimizer, Self-Scaling BFGS and Broyden optimizers, and demonstrate their performance on problems including the Helmholtz equation, Stokes flow, inviscid Burgers equation, Euler equations for high-speed flows, and stiff ODEs arising in pharmacokinetics and pharmacodynamics. Beyond optimizer development, we also propose new PINN-based methods for solving the inviscid Burgers and Euler equations, and compare the resulting solutions against high-order numerical methods to provide a rigorous and fair assessment. Finally, we address the challenge of scaling these quasi-Newton optimizers for batched training, enabling efficient and scalable solutions for large data-driven problems.

LGDec 2, 2025
Retrofitting Earth System Models with Cadence-Limited Neural Operator Updates

Aniruddha Bora, Shixuan Zhang, Khemraj Shukla et al.

Coarse resolution, imperfect parameterizations, and uncertain initial states and forcings limit Earth-system model (ESM) predictions. Traditional bias correction via data assimilation improves constrained simulations but offers limited benefit once models run freely. We introduce an operator-learning framework that maps instantaneous model states to bias-correction tendencies and applies them online during integration. Building on a U-Net backbone, we develop two operator architectures Inception U-Net (IUNet) and a multi-scale network (M\&M) that combine diverse upsampling and receptive fields to capture multiscale nonlinear features under Energy Exascale Earth System Model (E3SM) runtime constraints. Trained on two years E3SM simulations nudged toward ERA5 reanalysis, the operators generalize across height levels and seasons. Both architectures outperform standard U-Net baselines in offline tests, indicating that functional richness rather than parameter count drives performance. In online hybrid E3SM runs, M\&M delivers the most consistent bias reductions across variables and vertical levels. The ML-augmented configurations remain stable and computationally feasible in multi-year simulations, providing a practical pathway for scalable hybrid modeling. Our framework emphasizes long-term stability, portability, and cadence-limited updates, demonstrating the utility of expressive ML operators for learning structured, cross-scale relationships and retrofitting legacy ESMs.

FLU-DYNDec 22, 2025
GIMLET: Generalizable and Interpretable Model Learning through Embedded Thermodynamics

Suguru Shiratori, Elham Kiyani, Khemraj Shukla et al.

We develop a data-driven framework for discovering constitutive relations in models of fluid flow and scalar transport. Our approach infers unknown closure terms in the governing equations (gray-box discovery) under the assumption that the temporal derivative, convective transport, and pressure-gradient contributions are known. The formulation is rooted in a variational principle from nonequilibrium thermodynamics, where the dynamics is defined by a free-energy functional and a dissipation functional. The unknown constitutive terms arise as functional derivatives of these functionals with respect to the state variables. To enable a flexible and structured model discovery, the free-energy and dissipation functionals are parameterized using neural networks, while their functional derivatives are obtained via automatic differentiation. This construction enforces thermodynamic consistency by design, ensuring monotonic decay of the total free energy and non-negative entropy production. The resulting method, termed GIMLET (Generalizable and Interpretable Model Learning through Embedded Thermodynamics), avoids reliance on a predefined library of candidate functions, unlike sparse regression or symbolic identification approaches. The learned models are generalizable in that functionals identified from one dataset can be transferred to distinct datasets governed by the same underlying equations. Moreover, the inferred free-energy and dissipation functions provide direct physical interpretability of the learned dynamics. The framework is demonstrated on several benchmark systems, including the viscous Burgers equation, the Kuramoto--Sivashinsky equation, and the incompressible Navier--Stokes equations for both Newtonian and non-Newtonian fluids.

OCOct 22, 2023
Randomized Forward Mode of Automatic Differentiation For Optimization Algorithms

Khemraj Shukla, Yeonjong Shin

We present a randomized forward mode gradient (RFG) as an alternative to backpropagation. RFG is a random estimator for the gradient that is constructed based on the directional derivative along a random vector. The forward mode automatic differentiation (AD) provides an efficient computation of RFG. The probability distribution of the random vector determines the statistical properties of RFG. Through the second moment analysis, we found that the distribution with the smallest kurtosis yields the smallest expected relative squared error. By replacing gradient with RFG, a class of RFG-based optimization algorithms is obtained. By focusing on gradient descent (GD) and Polyak's heavy ball (PHB) methods, we present a convergence analysis of RFG-based optimization algorithms for quadratic functions. Computational experiments are presented to demonstrate the performance of the proposed algorithms and verify the theoretical findings.

LGDec 8, 2023
Rethinking materials simulations: Blending direct numerical simulations with neural operators

Vivek Oommen, Khemraj Shukla, Saaketh Desai et al.

Direct numerical simulations (DNS) are accurate but computationally expensive for predicting materials evolution across timescales, due to the complexity of the underlying evolution equations, the nature of multiscale spatio-temporal interactions, and the need to reach long-time integration. We develop a new method that blends numerical solvers with neural operators to accelerate such simulations. This methodology is based on the integration of a community numerical solver with a U-Net neural operator, enhanced by a temporal-conditioning mechanism that enables accurate extrapolation and efficient time-to-solution predictions of the dynamics. We demonstrate the effectiveness of this framework on simulations of microstructure evolution during physical vapor deposition modeled via the phase-field method. Such simulations exhibit high spatial gradients due to the co-evolution of different material phases with simultaneous slow and fast materials dynamics. We establish accurate extrapolation of the coupled solver with up to 16.5$\times$ speed-up compared to DNS. This methodology is generalizable to a broad range of evolutionary models, from solid mechanics, to fluid dynamics, geophysics, climate, and more.

LGFeb 10
Drug Release Modeling using Physics-Informed Neural Networks

Daanish Aleem Qureshi, Khemraj Shukla, Vikas Srivastava

Accurate modeling of drug release is essential for designing and developing controlled-release systems. Classical models (Fick, Higuchi, Peppas) rely on simplifying assumptions that limit their accuracy in complex geometries and release mechanisms. Here, we propose a novel approach using Physics-Informed Neural Networks (PINNs) and Bayesian PINNs (BPINNs) for predicting release from planar, 1D-wrinkled, and 2D-crumpled films. This approach uniquely integrates Fick's diffusion law with limited experimental data to enable accurate long-term predictions from short-term measurements, and is systematically benchmarked against classical drug release models. We embedded Fick's second law into PINN as loss with 10,000 Latin-hypercube collocation points and utilized previously published experimental datasets to assess drug release performance through mean absolute error (MAE) and root mean square error (RMSE), considering noisy conditions and limited-data scenarios. Our approach reduced mean error by up to 40% relative to classical baselines across all film types. The PINN formulation achieved RMSE <0.05 utilizing only the first 6% of the release time data (reducing 94% of release time required for the experiments) for the planar film. For wrinkled and crumpled films, the PINN reached RMSE <0.05 in 33% of the release time data. BPINNs provide tighter and more reliable uncertainty quantification under noise. By combining physical laws with experimental data, the proposed framework yields highly accurate long-term release predictions from short-term measurements, offering a practical route for accelerated characterization and more efficient early-stage drug release system formulation.

LGJan 22, 2025
Optimizing the Optimizer for Physics-Informed Neural Networks and Kolmogorov-Arnold Networks

Elham Kiyani, Khemraj Shukla, Jorge F. Urbán et al.

Physics-Informed Neural Networks (PINNs) have revolutionized the computation of PDE solutions by integrating partial differential equations (PDEs) into the neural network's training process as soft constraints, becoming an important component of the scientific machine learning (SciML) ecosystem. More recently, physics-informed Kolmogorv-Arnold networks (PIKANs) have also shown to be effective and comparable in accuracy with PINNs. In their current implementation, both PINNs and PIKANs are mainly optimized using first-order methods like Adam, as well as quasi-Newton methods such as BFGS and its low-memory variant, L-BFGS. However, these optimizers often struggle with highly non-linear and non-convex loss landscapes, leading to challenges such as slow convergence, local minima entrapment, and (non)degenerate saddle points. In this study, we investigate the performance of Self-Scaled BFGS (SSBFGS), Self-Scaled Broyden (SSBroyden) methods and other advanced quasi-Newton schemes, including BFGS and L-BFGS with different line search strategies. These methods dynamically rescale updates based on historical gradient information, thus enhancing training efficiency and accuracy. We systematically compare these optimizers using both PINNs and PIKANs on key challenging PDEs, including the Burgers, Allen-Cahn, Kuramoto-Sivashinsky, Ginzburg-Landau, and Stokes equations. Additionally, we evaluate the performance of SSBFGS and SSBroyden for Deep Operator Network (DeepONet) architectures, demonstrating their effectiveness for data-driven operator learning. Our findings provide state-of-the-art results with orders-of-magnitude accuracy improvements without the use of adaptive weights or any other enhancements typically employed in PINNs.

QMApr 10, 2025
Representation Meets Optimization: Training PINNs and PIKANs for Gray-Box Discovery in Systems Pharmacology

Nazanin Ahmadi Daryakenari, Khemraj Shukla, George Em Karniadakis

Physics-Informed Kolmogorov-Arnold Networks (PIKANs) are gaining attention as an effective counterpart to the original multilayer perceptron-based Physics-Informed Neural Networks (PINNs). Both representation models can address inverse problems and facilitate gray-box system identification. However, a comprehensive understanding of their performance in terms of accuracy and speed remains underexplored. In particular, we introduce a modified PIKAN architecture, tanh-cPIKAN, which is based on Chebyshev polynomials for parametrization of the univariate functions with an extra nonlinearity for enhanced performance. We then present a systematic investigation of how choices of the optimizer, representation, and training configuration influence the performance of PINNs and PIKANs in the context of systems pharmacology modeling. We benchmark a wide range of first-order, second-order, and hybrid optimizers, including various learning rate schedulers. We use the new Optax library to identify the most effective combinations for learning gray-boxes under ill-posed, non-unique, and data-sparse conditions. We examine the influence of model architecture (MLP vs. KAN), numerical precision (single vs. double), the need for warm-up phases for second-order methods, and sensitivity to the initial learning rate. We also assess the optimizer scalability for larger models and analyze the trade-offs introduced by JAX in terms of computational efficiency and numerical accuracy. Using two representative systems pharmacology case studies - a pharmacokinetics model and a chemotherapy drug-response model - we offer practical guidance on selecting optimizers and representation models/architectures for robust and efficient gray-box discovery. Our findings provide actionable insights for improving the training of physics-informed networks in biomedical applications and beyond.

LGApr 26, 2025
$PINN - a Domain Decomposition Method for Bayesian Physics-Informed Neural Networks

Júlia Vicens Figueres, Juliette Vanderhaeghen, Federica Bragone et al.

Physics-Informed Neural Networks (PINNs) are a novel computational approach for solving partial differential equations (PDEs) with noisy and sparse initial and boundary data. Although, efficient quantification of epistemic and aleatoric uncertainties in big multi-scale problems remains challenging. We propose \$PINN a novel method of computing global uncertainty in PDEs using a Bayesian framework, by combining local Bayesian Physics-Informed Neural Networks (BPINN) with domain decomposition. The solution continuity across subdomains is obtained by imposing the flux continuity across the interface of neighboring subdomains. To demonstrate the effectiveness of \$PINN, we conduct a series of computational experiments on PDEs in 1D and 2D spatial domains. Although we have adopted conservative PINNs (cPINNs), the method can be seamlessly extended to other domain decomposition techniques. The results infer that the proposed method recovers the global uncertainty by computing the local uncertainty exactly more efficiently as the uncertainty in each subdomain can be computed concurrently. The robustness of \$PINN is verified by adding uncorrelated random noise to the training data up to 15% and testing for different domain sizes.

LGMay 10, 2025
FMEnets: Flow, Material, and Energy networks for non-ideal plug flow reactor design

Chenxi Wu, Juan Diego Toscano, Khemraj Shukla et al.

We propose FMEnets, a physics-informed machine learning framework for the design and analysis of non-ideal plug flow reactors. FMEnets integrates the fundamental governing equations (Navier-Stokes for fluid flow, material balance for reactive species transport, and energy balance for temperature distribution) into a unified multi-scale network model. The framework is composed of three interconnected sub-networks with independent optimizers that enable both forward and inverse problem-solving. In the forward mode, FMEnets predicts velocity, pressure, species concentrations, and temperature profiles using only inlet and outlet information. In the inverse mode, FMEnets utilizes sparse multi-residence-time measurements to simultaneously infer unknown kinetic parameters and states. FMEnets can be implemented either as FME-PINNs, which employ conventional multilayer perceptrons, or as FME-KANs, based on Kolmogorov-Arnold Networks. Comprehensive ablation studies highlight the critical role of the FMEnets architecture in achieving accurate predictions. Specifically, FME-KANs are more robust to noise than FME-PINNs, although both representations are comparable in accuracy and speed in noise-free conditions. The proposed framework is applied to three different sets of reaction scenarios and is compared with finite element simulations. FMEnets effectively captures the complex interactions, achieving relative errors less than 2.5% for the unknown kinetic parameters. The new network framework not only provides a computationally efficient alternative for reactor design and optimization, but also opens new avenues for integrating empirical correlations, limited and noisy experimental data, and fundamental physical equations to guide reactor design.

OCMay 23, 2025
Deep Operator Neural Network Model Predictive Control

Thomas Oliver de Jong, Khemraj Shukla, Mircea Lazar

In this paper, we consider the design of model predictive control (MPC) algorithms based on deep operator neural networks (DeepONets). These neural networks are capable of accurately approximating real and complex valued solutions of continuous time nonlinear systems without relying on recurrent architectures. The DeepONet architecture is made up of two feedforward neural networks: the branch network, which encodes the input function space, and the trunk network, which represents dependencies on temporal variables or initial conditions. Utilizing the original DeepONet architecture as a predictor within MPC for Multi Input Multi Output (MIMO) systems requires multiple branch networks, to generate multi output predictions, one for each input. Moreover, to predict multiple time steps into the future, the network has to be evaluated multiple times. Motivated by this, we introduce a multi step DeepONet (MS-DeepONet) architecture that computes in one shot multi step predictions of system outputs from multi step input sequences, which is better suited for MPC. We prove that the MS DeepONet is a universal approximator in terms of multi step sequence prediction. Additionally, we develop automated hyper parameter selection strategies and implement MPC frameworks using both the standard DeepONet and the proposed MS DeepONet architectures in PyTorch. The implementation is publicly available on GitHub. Simulation results demonstrate that MS-DeepONet consistently outperforms the standard DeepONet in learning and predictive control tasks across several nonlinear benchmark systems: the van der Pol oscillator, the quadruple tank process, and a cart pendulum unstable system, where it successfully learns and executes multiple swing up and stabilization policies.

LGApr 14, 2025
Leveraging Deep Operator Networks (DeepONet) for Acoustic Full Waveform Inversion (FWI)

Kamaljyoti Nath, Khemraj Shukla, Victor C. Tsai et al.

Full Waveform Inversion (FWI) is an important geophysical technique considered in subsurface property prediction. It solves the inverse problem of predicting high-resolution Earth interior models from seismic data. Traditional FWI methods are computationally demanding. Inverse problems in geophysics often face challenges of non-uniqueness due to limited data, as data are often collected only on the surface. In this study, we introduce a novel methodology that leverages Deep Operator Networks (DeepONet) to attempt to improve both the efficiency and accuracy of FWI. The proposed DeepONet methodology inverts seismic waveforms for the subsurface velocity field. This approach is able to capture some key features of the subsurface velocity field. We have shown that the architecture can be applied to noisy seismic data with an accuracy that is better than some other machine learning methods. We also test our proposed method with out-of-distribution prediction for different velocity models. The proposed DeepONet shows comparable and better accuracy in some velocity models than some other machine learning methods. To improve the FWI workflow, we propose using the DeepONet output as a starting model for conventional FWI and that it may improve FWI performance. While we have only shown that DeepONet facilitates faster convergence than starting with a homogeneous velocity field, it may have some benefits compared to other approaches to constructing starting models. This integration of DeepONet into FWI may accelerate the inversion process and may also enhance its robustness and reliability.

CEFeb 20, 2025
A Neural Operator-Based Emulator for Regional Shallow Water Dynamics

Peter Rivera-Casillas, Sourav Dutta, Shukai Cai et al.

Coastal regions are particularly vulnerable to the impacts of rising sea levels and extreme weather events. Accurate real-time forecasting of hydrodynamic processes in these areas is essential for infrastructure planning and climate adaptation. In this study, we present the Multiple-Input Temporal Operator Network (MITONet), a novel autoregressive neural emulator that employs dimensionality reduction to efficiently approximate high-dimensional numerical solvers for complex, nonlinear problems that are governed by time-dependent, parameterized partial differential equations. Although MITONet is applicable to a wide range of problems, we showcase its capabilities by forecasting regional tide-driven dynamics described by the two-dimensional shallow-water equations, while incorporating initial conditions, boundary conditions, and a varying domain parameter. We demonstrate MITONet's performance in a real-world application, highlighting its ability to make accurate predictions by extrapolating both in time and parametric space.

LGApr 4, 2025
Discovering Partially Known Ordinary Differential Equations: a Case Study on the Chemical Kinetics of Cellulose Degradation

Federica Bragone, Kateryna Morozovska, Tor Laneryd et al.

The degree of polymerization (DP) is one of the methods for estimating the aging of the polymer based insulation systems, such as cellulose insulation in power components. The main degradation mechanisms in polymers are hydrolysis, pyrolysis, and oxidation. These mechanisms combined cause a reduction of the DP. However, the data availability for these types of problems is usually scarce. This study analyzes insulation aging using cellulose degradation data from power transformers. The aging problem for the cellulose immersed in mineral oil inside power transformers is modeled with ordinary differential equations (ODEs). We recover the governing equations of the degradation system using Physics-Informed Neural Networks (PINNs) and symbolic regression. We apply PINNs to discover the Arrhenius equation's unknown parameters in the Ekenstam ODE describing cellulose contamination content and the material aging process related to temperature for synthetic data and real DP values. A modification of the Ekenstam ODE is given by Emsley's system of ODEs, where the rate constant expressed by the Arrhenius equation decreases in time with the new formulation. We use PINNs and symbolic regression to recover the functional form of one of the ODEs of the system and to identify an unknown parameter.

LGJun 5, 2024
A comprehensive and FAIR comparison between MLP and KAN representations for differential equations and operator networks

Khemraj Shukla, Juan Diego Toscano, Zhicheng Wang et al.

Kolmogorov-Arnold Networks (KANs) were recently introduced as an alternative representation model to MLP. Herein, we employ KANs to construct physics-informed machine learning models (PIKANs) and deep operator models (DeepOKANs) for solving differential equations for forward and inverse problems. In particular, we compare them with physics-informed neural networks (PINNs) and deep operator networks (DeepONets), which are based on the standard MLP representation. We find that although the original KANs based on the B-splines parameterization lack accuracy and efficiency, modified versions based on low-order orthogonal polynomials have comparable performance to PINNs and DeepONet although they still lack robustness as they may diverge for different random seeds or higher order orthogonal polynomials. We visualize their corresponding loss landscapes and analyze their learning dynamics using information bottleneck theory. Our study follows the FAIR principles so that other researchers can use our benchmarks to further advance this emerging topic.

DIS-NNMay 18, 2023
A Framework Based on Symbolic Regression Coupled with eXtended Physics-Informed Neural Networks for Gray-Box Learning of Equations of Motion from Data

Elham Kiyani, Khemraj Shukla, George Em Karniadakis et al.

We propose a framework and an algorithm to uncover the unknown parts of nonlinear equations directly from data. The framework is based on eXtended Physics-Informed Neural Networks (X-PINNs), domain decomposition in space-time, but we augment the original X-PINN method by imposing flux continuity across the domain interfaces. The well-known Allen-Cahn equation is used to demonstrate the approach. The Frobenius matrix norm is used to evaluate the accuracy of the X-PINN predictions and the results show excellent performance. In addition, symbolic regression is employed to determine the closed form of the unknown part of the equation from the data, and the results confirm the accuracy of the X-PINNs based approach. To test the framework in a situation resembling real-world data, random noise is added to the datasets to mimic scenarios such as the presence of thermal noise or instrument errors. The results show that the framework is stable against significant amount of noise. As the final part, we determine the minimal amount of data required for training the neural network. The framework is able to predict the correct form and coefficients of the underlying dynamical equation when at least 50\% data is used for training.

LGMay 7, 2020
Physics-informed neural network for ultrasound nondestructive quantification of surface breaking cracks

Khemraj Shukla, Patricio Clark Di Leoni, James Blackshire et al.

We introduce an optimized physics-informed neural network (PINN) trained to solve the problem of identifying and characterizing a surface breaking crack in a metal plate. PINNs are neural networks that can combine data and physics in the learning process by adding the residuals of a system of Partial Differential Equations to the loss function. Our PINN is supervised with realistic ultrasonic surface acoustic wave data acquired at a frequency of 5 MHz. The ultrasonic surface wave data is represented as a surface deformation on the top surface of a metal plate, measured by using the method of laser vibrometry. The PINN is physically informed by the acoustic wave equation and its convergence is sped up using adaptive activation functions. The adaptive activation function uses a scalable hyperparameter in the activation function, which is optimized to achieve best performance of the network as it changes dynamically the topology of the loss function involved in the optimization process. The usage of adaptive activation function significantly improves the convergence, notably observed in the current study. We use PINNs to estimate the speed of sound of the metal plate, which we do with an error of 1\%, and then, by allowing the speed of sound to be space dependent, we identify and characterize the crack as the positions where the speed of sound has decreased. Our study also shows the effect of sub-sampling of the data on the sensitivity of sound speed estimates. More broadly, the resulting model shows a promising deep neural network model for ill-posed inverse problems.