Zonghan Wu

Yin Zhang, Jiaxuan Zhao, Zonghan Wu et al.

Vision-Language Models (VLMs) frequently suffer from visual perception errors and hallucinations that compromise answer accuracy in complex reasoning tasks. Reinforcement Learning with Verifiable Rewards (RLVR) offers a promising solution by optimizing policies using answer correctness signals. Despite their effectiveness, prevailing RLVR methods face two critical limitations. First, much of the sampling budget is wasted on trajectories doomed to fail due to early visual description errors. Second, sparse rewards cannot distinguish whether failures stem from visual perception or reasoning stages. We introduce MIRL, a decoupled framework that addresses both limitations by leveraging mutual information (MI) between generated descriptions and visual inputs as a cheap pre-screening signal. This enables intelligent budget allocation toward high-potential trajectories via forking, while decoupled training provides independent MI-based rewards for visual perception optimization, resolving reward blindness. Experiments on six vision-language reasoning benchmarks demonstrate that MIRL achieves 70.22% average accuracy and successfully surpasses the performance of sampling 16 complete trajectories using only 10 pre-samples with top-6 selection (25% fewer complete trajectories). Our code is available at: https://anonymous.4open.science/r/mirl-main/.

Fengwen Chen, Guodong Long, Zonghan Wu et al.

Knowledge sharing and model personalization are two key components in the conceptual framework of personalized federated learning (PFL). Existing PFL methods focus on proposing new model personalization mechanisms while simply implementing knowledge sharing by aggregating models from all clients, regardless of their relation graph. This paper aims to enhance the knowledge-sharing process in PFL by leveraging the graph-based structural information among clients. We propose a novel structured federated learning (SFL) framework to learn both the global and personalized models simultaneously using client-wise relation graphs and clients' private data. We cast SFL with graph into a novel optimization problem that can model the client-wise complex relations and graph-based structural topology by a unified framework. Moreover, in addition to using an existing relation graph, SFL could be expanded to learn the hidden relations among clients. Experiments on traffic and image benchmark datasets can demonstrate the effectiveness of the proposed method. All implementation codes are available on Github

Xiaoshui Huang, Tianlin Zhu, Yifan Zuo et al.

Single-cell RNA sequencing (scRNA-seq) is essential for decoding tumor heterogeneity. However, pan-cancer research still faces two key challenges: learning discriminative and efficient single-cell representations, and establishing a comprehensive evaluation benchmark. In this paper, we introduce PanFoMa, a lightweight hybrid neural network that combines the strengths of Transformers and state-space models to achieve a balance between performance and efficiency. PanFoMa consists of a front-end local-context encoder with shared self-attention layers to capture complex, order-independent gene interactions; and a back-end global sequential feature decoder that efficiently integrates global context using a linear-time state-space model. This modular design preserves the expressive power of Transformers while leveraging the scalability of Mamba to enable transcriptome modeling, effectively capturing both local and global regulatory signals. To enable robust evaluation, we also construct a large-scale pan-cancer single-cell benchmark, PanFoMaBench, containing over 3.5 million high-quality cells across 33 cancer subtypes, curated through a rigorous preprocessing pipeline. Experimental results show that PanFoMa outperforms state-of-the-art models on our pan-cancer benchmark (+4.0\%) and across multiple public tasks, including cell type annotation (+7.4\%), batch integration (+4.0\%) and multi-omics integration (+3.1\%). The code is available at https://github.com/Xiaoshui-Huang/PanFoMa.

Ke Yang, Panpan Li, Zonghan Wu et al.

When a structured tool agent fails mid-execution, the runtime faces a dilemma: replaying the entire task is safe but wasteful, while restoring from a local checkpoint is efficient but can leave committed downstream work tied to an upstream history that no longer exists. This tension is acute in commitment-sensitive settings, where rollback targets a single failed instance yet downstream consumers have already acted on its output. Existing recovery approaches provide mechanical rollback but no criterion for whether a local restore remains semantically valid after downstream commitment. We formalize this gap as semantic recoverability and address it in DART, a modular runtime that localizes the failed instance, certifies semantically recoverable boundaries of that instance, aligns checkpoints to those boundaries, and selects an admissible restore point that preserves committed downstream work under dependency and effect constraints-or blocks otherwise. Across three LLM-driven domains and external validation on a LangGraph-based substrate, DART correctly recovers all evaluated commitment-sensitive cases where baseline local recovery fails, and a five-domain safety audit finds no unsafe admitted rollbacks. These results show that controller legality does not imply semantic validity, and that sound local recovery requires an explicit admissibility check.

Yumeng Yao, Jingzhi Dong, Haowen Gu et al.

With the rapid progress of multimodal foundation models and predictive pre-training, an important open question is how to equip 3D point clouds with a pre-training paradigm that is better aligned with next-token and next-embedding learning. Existing point-cloud self-supervised methods are largely built on masked reconstruction or explicit geometric generation, and thus remain tied to input recovery rather than predictive dependency modeling. In this paper, we introduce PointNTP, which reformulates point cloud pre-training as a fully causal, decoder-free latent Next-Token Prediction problem. Specifically, each point cloud is first partitioned into local patches and serialized into a structured 3D token sequence according to patch-center geometry. The resulting sequence is then modeled by a causal Transformer under prefix-only conditioning, and trained with a shift-based prediction objective stabilized by stop-gradient targets. This design enables the model to learn structural dependencies directly in latent space, without reconstruction decoders or explicit geometric recovery. Extensive experiments demonstrate that the proposed PointNTP is highly competitive across multiple downstream tasks: it achieves 93.8%(+0.5%), 92.6%(+0.3%), and 89.3%(+1.1%) on OBJ_BG, OBJ_ONLY, and PB_T50_RS of ScanObjectNN, respectively; obtains 85.0%(+0.1%) in Cls.mIoU on ShapeNetPart; and reaches 71.1% mAcc on S3DIS Area 5. Overall, decoder-free causal latent prediction provides a simple, scalable, and potentially modality-agnostic paradigm for point-cloud self-supervised learning, offering a new 3D perspective on foundation-style predictive learning for 3D data.

Zonghan Wu, Da Zheng, Shirui Pan et al.

This paper aims to unify spatial dependency and temporal dependency in a non-Euclidean space while capturing the inner spatial-temporal dependencies for traffic data. For spatial-temporal attribute entities with topological structure, the space-time is consecutive and unified while each node's current status is influenced by its neighbors' past states over variant periods of each neighbor. Most spatial-temporal neural networks for traffic forecasting study spatial dependency and temporal correlation separately in processing, gravely impaired the spatial-temporal integrity, and ignore the fact that the neighbors' temporal dependency period for a node can be delayed and dynamic. To model this actual condition, we propose TraverseNet, a novel spatial-temporal graph neural network, viewing space and time as an inseparable whole, to mine spatial-temporal graphs while exploiting the evolving spatial-temporal dependencies for each node via message traverse mechanisms. Experiments with ablation and parameter studies have validated the effectiveness of the proposed TraverseNet, and the detailed implementation can be found from https://github.com/nnzhan/TraverseNet.

Zonghan Wu, Shirui Pan, Fengwen Chen et al.

Deep learning has revolutionized many machine learning tasks in recent years, ranging from image classification and video processing to speech recognition and natural language understanding. The data in these tasks are typically represented in the Euclidean space. However, there is an increasing number of applications where data are generated from non-Euclidean domains and are represented as graphs with complex relationships and interdependency between objects. The complexity of graph data has imposed significant challenges on existing machine learning algorithms. Recently, many studies on extending deep learning approaches for graph data have emerged. In this survey, we provide a comprehensive overview of graph neural networks (GNNs) in data mining and machine learning fields. We propose a new taxonomy to divide the state-of-the-art graph neural networks into four categories, namely recurrent graph neural networks, convolutional graph neural networks, graph autoencoders, and spatial-temporal graph neural networks. We further discuss the applications of graph neural networks across various domains and summarize the open source codes, benchmark data sets, and model evaluation of graph neural networks. Finally, we propose potential research directions in this rapidly growing field.

Jiaqi Deng, Zonghan Wu, Huan Huo et al.

Knowledge-based Vision Question Answering (KB-VQA) extends general Vision Question Answering (VQA) by not only requiring the understanding of visual and textual inputs but also extensive range of knowledge, enabling significant advancements across various real-world applications. KB-VQA introduces unique challenges, including the alignment of heterogeneous information from diverse modalities and sources, the retrieval of relevant knowledge from noisy or large-scale repositories, and the execution of complex reasoning to infer answers from the combined context. With the advancement of Large Language Models (LLMs), KB-VQA systems have also undergone a notable transformation, where LLMs serve as powerful knowledge repositories, retrieval-augmented generators and strong reasoners. Despite substantial progress, no comprehensive survey currently exists that systematically organizes and reviews the existing KB-VQA methods. This survey aims to fill this gap by establishing a structured taxonomy of KB-VQA approaches, and categorizing the systems into main stages: knowledge representation, knowledge retrieval, and knowledge reasoning. By exploring various knowledge integration techniques and identifying persistent challenges, this work also outlines promising future research directions, providing a foundation for advancing KB-VQA models and their applications.

Zonghan Wu, Congyuan Zou, Junlin Wang et al.

Generative AI, particularly large language models (LLMs), is beginning to transform the financial industry by automating tasks and helping to make sense of complex financial information. One especially promising use case is the automatic creation of fundamental analysis reports, which are essential for making informed investment decisions, evaluating credit risks, guiding corporate mergers, etc. While LLMs attempt to generate these reports from a single prompt, the risks of inaccuracy are significant. Poor analysis can lead to misguided investments, regulatory issues, and loss of trust. Existing financial benchmarks mainly evaluate how well LLMs answer financial questions but do not reflect performance in real-world tasks like generating financial analysis reports. In this paper, we propose FinAR-Bench, a solid benchmark dataset focusing on financial statement analysis, a core competence of fundamental analysis. To make the evaluation more precise and reliable, we break this task into three measurable steps: extracting key information, calculating financial indicators, and applying logical reasoning. This structured approach allows us to objectively assess how well LLMs perform each step of the process. Our findings offer a clear understanding of LLMs current strengths and limitations in fundamental analysis and provide a more practical way to benchmark their performance in real-world financial settings.

Jiaqi Deng, Kaize Shi, Zonghan Wu et al.

Knowledge-based Vision Question Answering (KB-VQA) systems address complex visual-grounded questions with knowledge retrieved from external knowledge bases. The tasks of knowledge retrieval and answer generation tasks both necessitate precise multimodal understanding of question context and external knowledge. However, existing methods treat these two stages as separate modules with limited interaction during training, which hinders bi-directional parametric knowledge sharing, ultimately leading to suboptimal performance. To fully exploit the cross-task synergy in KB-VQA, we propose a unified retrieval-augmented VQA framework with collaborative parametric knowledge calibration. The proposed framework can effectively adapt general multimodal pre-trained models for fine-grained, knowledge-intensive tasks while enabling the retriever and generator to collaboratively enhance and share their parametric knowledge during both training and inference. To enhance fine-grained understanding of questions and external documents, we also integrate late interaction mechanism into the proposed training framework. Additionally, we introduce a reflective-answering mechanism that allows the model to explicitly evaluate and refine its knowledge boundary. Our approach achieves competitive performance against state-of-the-art models, delivering a significant 4.7\% improvement in answering accuracy, and brings an average 7.5\% boost in base MLLMs' VQA performance.

Chuanpan Zheng, Xiaoliang Fan, Shirui Pan et al.

Recent studies have shifted their focus towards formulating traffic forecasting as a spatio-temporal graph modeling problem. Typically, they constructed a static spatial graph at each time step and then connected each node with itself between adjacent time steps to create a spatio-temporal graph. However, this approach failed to explicitly reflect the correlations between different nodes at different time steps, thus limiting the learning capability of graph neural networks. Additionally, those models overlooked the dynamic spatio-temporal correlations among nodes by using the same adjacency matrix across different time steps. To address these limitations, we propose a novel approach called Spatio-Temporal Joint Graph Convolutional Networks (STJGCN) for accurate traffic forecasting on road networks over multiple future time steps. Specifically, our method encompasses the construction of both pre-defined and adaptive spatio-temporal joint graphs (STJGs) between any two time steps, which represent comprehensive and dynamic spatio-temporal correlations. We further introduce dilated causal spatio-temporal joint graph convolution layers on the STJG to capture spatio-temporal dependencies from distinct perspectives with multiple ranges. To aggregate information from different ranges, we propose a multi-range attention mechanism. Finally, we evaluate our approach on five public traffic datasets and experimental results demonstrate that STJGCN is not only computationally efficient but also outperforms 11 state-of-the-art baseline methods.

Xu Yan, Xiaoliang Fan, Peizhen Yang et al.

Representation learning on temporal interaction graphs (TIG) is to model complex networks with the dynamic evolution of interactions arising in a broad spectrum of problems. Existing dynamic embedding methods on TIG discretely update node embeddings merely when an interaction occurs. They fail to capture the continuous dynamic evolution of embedding trajectories of nodes. In this paper, we propose a two-module framework named ConTIG, a continuous representation method that captures the continuous dynamic evolution of node embedding trajectories. With two essential modules, our model exploit three-fold factors in dynamic networks which include latest interaction, neighbor features and inherent characteristics. In the first update module, we employ a continuous inference block to learn the nodes' state trajectories by learning from time-adjacent interaction patterns between node pairs using ordinary differential equations. In the second transform module, we introduce a self-attention mechanism to predict future node embeddings by aggregating historical temporal interaction information. Experiments results demonstrate the superiority of ConTIG on temporal link prediction, temporal node recommendation and dynamic node classification tasks compared with a range of state-of-the-art baselines, especially for long-interval interactions prediction.

Zonghan Wu, Shirui Pan, Guodong Long et al.

Graph convolutional networks are becoming indispensable for deep learning from graph-structured data. Most of the existing graph convolutional networks share two big shortcomings. First, they are essentially low-pass filters, thus the potentially useful middle and high frequency band of graph signals are ignored. Second, the bandwidth of existing graph convolutional filters is fixed. Parameters of a graph convolutional filter only transform the graph inputs without changing the curvature of a graph convolutional filter function. In reality, we are uncertain about whether we should retain or cut off the frequency at a certain point unless we have expert domain knowledge. In this paper, we propose Automatic Graph Convolutional Networks (AutoGCN) to capture the full spectrum of graph signals and automatically update the bandwidth of graph convolutional filters. While it is based on graph spectral theory, our AutoGCN is also localized in space and has a spatial form. Experimental results show that AutoGCN achieves significant improvement over baseline methods which only work as low-pass filters.

Zonghan Wu, Shirui Pan, Guodong Long et al.

Modeling multivariate time series has long been a subject that has attracted researchers from a diverse range of fields including economics, finance, and traffic. A basic assumption behind multivariate time series forecasting is that its variables depend on one another but, upon looking closely, it is fair to say that existing methods fail to fully exploit latent spatial dependencies between pairs of variables. In recent years, meanwhile, graph neural networks (GNNs) have shown high capability in handling relational dependencies. GNNs require well-defined graph structures for information propagation which means they cannot be applied directly for multivariate time series where the dependencies are not known in advance. In this paper, we propose a general graph neural network framework designed specifically for multivariate time series data. Our approach automatically extracts the uni-directed relations among variables through a graph learning module, into which external knowledge like variable attributes can be easily integrated. A novel mix-hop propagation layer and a dilated inception layer are further proposed to capture the spatial and temporal dependencies within the time series. The graph learning, graph convolution, and temporal convolution modules are jointly learned in an end-to-end framework. Experimental results show that our proposed model outperforms the state-of-the-art baseline methods on 3 of 4 benchmark datasets and achieves on-par performance with other approaches on two traffic datasets which provide extra structural information.

Zonghan Wu, Shirui Pan, Guodong Long et al.

Spatial-temporal graph modeling is an important task to analyze the spatial relations and temporal trends of components in a system. Existing approaches mostly capture the spatial dependency on a fixed graph structure, assuming that the underlying relation between entities is pre-determined. However, the explicit graph structure (relation) does not necessarily reflect the true dependency and genuine relation may be missing due to the incomplete connections in the data. Furthermore, existing methods are ineffective to capture the temporal trends as the RNNs or CNNs employed in these methods cannot capture long-range temporal sequences. To overcome these limitations, we propose in this paper a novel graph neural network architecture, Graph WaveNet, for spatial-temporal graph modeling. By developing a novel adaptive dependency matrix and learn it through node embedding, our model can precisely capture the hidden spatial dependency in the data. With a stacked dilated 1D convolution component whose receptive field grows exponentially as the number of layers increases, Graph WaveNet is able to handle very long sequences. These two components are integrated seamlessly in a unified framework and the whole framework is learned in an end-to-end manner. Experimental results on two public traffic network datasets, METR-LA and PEMS-BAY, demonstrate the superior performance of our algorithm.