Xiangyu Shi

Xinyue Lou, Jinan Xu, Jingyi Yin et al.

As Multimodal Large Language Models (MLLMs) become an indispensable assistant in human life, the unsafe content generated by MLLMs poses a danger to human behavior, perpetually overhanging human society like a sword of Damocles. To investigate and evaluate the safety impact of MLLMs responses on human behavior in daily life, we introduce SaLAD, a multimodal safety benchmark which contains 2,013 real-world image-text samples across 10 common categories, with a balanced design covering both unsafe scenarios and cases of oversensitivity. It emphasizes realistic risk exposure, authentic visual inputs, and fine-grained cross-modal reasoning, ensuring that safety risks cannot be inferred from text alone. We further propose a safety-warning-based evaluation framework that encourages models to provide clear and informative safety warnings, rather than generic refusals. Results on 18 MLLMs demonstrate that the top-performing models achieve a safe response rate of only 57.2% on unsafe queries. Moreover, even popular safety alignment methods limit effectiveness of the models in our scenario, revealing the vulnerabilities of current MLLMs in identifying dangerous behaviors in daily life. Our dataset is available at https://github.com/xinyuelou/SaLAD.

Xiangyu Shi, Yanyuan Qiao, Qi Wu et al.

Effective object detection in autonomous vehicles is challenged by deployment in diverse and unfamiliar environments. Online Source-Free Domain Adaptation (O-SFDA) offers model adaptation using a stream of unlabeled data from a target domain in an online manner. However, not all captured frames contain information beneficial for adaptation, especially in the presence of redundant data and class imbalance issues. This paper introduces a novel approach to enhance O-SFDA for adaptive object detection through unsupervised data acquisition. Our methodology prioritizes the most informative unlabeled frames for inclusion in the online training process. Empirical evaluation on a real-world dataset reveals that our method outperforms existing state-of-the-art O-SFDA techniques, demonstrating the viability of unsupervised data acquisition for improving the adaptive object detector.

Xiangyu Shi, Zerui Li, Yanyuan Qiao et al.

Recent advances in Vision-and-Language Navigation in Continuous Environments (VLN-CE) have leveraged multimodal large language models (MLLMs) to achieve zero-shot navigation. However, existing methods often rely on panoramic observations and two-stage pipelines involving waypoint predictors, which introduce significant latency and limit real-world applicability. In this work, we propose Fast-SmartWay, an end-to-end zero-shot VLN-CE framework that eliminates the need for panoramic views and waypoint predictors. Our approach uses only three frontal RGB-D images combined with natural language instructions, enabling MLLMs to directly predict actions. To enhance decision robustness, we introduce an Uncertainty-Aware Reasoning module that integrates (i) a Disambiguation Module for avoiding local optima, and (ii) a Future-Past Bidirectional Reasoning mechanism for globally coherent planning. Experiments on both simulated and real-robot environments demonstrate that our method significantly reduces per-step latency while achieving competitive or superior performance compared to panoramic-view baselines. These results demonstrate the practicality and effectiveness of Fast-SmartWay for real-world zero-shot embodied navigation.

Xinyue Lou, You Li, Jinan Xu et al.

The rapid development of Multimodal Large Reasoning Models (MLRMs) has demonstrated broad application potential, yet their safety and reliability remain critical concerns that require systematic exploration. To address this gap, we conduct a comprehensive and systematic safety evaluation of 11 MLRMs across 5 benchmarks and unveil prevalent safety degradation phenomena in most advanced models. Moreover, our analysis reveals distinct safety patterns across different benchmarks: significant safety degradation is observed across jailbreak robustness benchmarks, whereas safety-awareness benchmarks demonstrate less pronounced degradation. In particular, the long thought process in some scenarios even enhances safety performance. Therefore, it is a potential approach to address safety issues in MLRMs by leveraging the intrinsic reasoning capabilities of the model to detect unsafe intent. To operationalize this insight, we construct a multimodal tuning dataset that incorporates a safety-oriented thought process. Experimental results from fine-tuning existing MLRMs with this dataset effectively enhances the safety on both jailbreak robustness and safety-awareness benchmarks. This study provides a new perspective for developing safe MLRMs. Our dataset is available at https://github.com/xinyuelou/Think-in-Safety.

Jiwen Zhang, Xiangyu Shi, Siyuan Wang et al.

Vision-and-Language Navigation (VLN) has recently benefited from Multimodal Large Language Models (MLLMs), enabling zero-shot navigation. While recent exploration-based zero-shot methods have shown promising results by leveraging global scene priors, they rely on high-quality human-crafted scene reconstructions, which are impractical for real-world robot deployment. When encountering an unseen environment, a robot should build its own priors through pre-exploration. However, these self-built reconstructions are inevitably incomplete and noisy, which severely degrade methods that depend on high-quality scene reconstructions. To address these issues, we propose SpatialAnt, a zero-shot navigation framework designed to bridge the gap between imperfect self-reconstructions and robust execution. SpatialAnt introduces a physical grounding strategy to recover the absolute metric scale for monocular-based reconstructions. Furthermore, rather than treating the noisy self-reconstructed scenes as absolute spatial references, we propose a novel visual anticipation mechanism. This mechanism leverages the noisy point clouds to render future observations, enabling the agent to perform counterfactual reasoning and prune paths that contradict human instructions. Extensive experiments in both simulated and real-world environments demonstrate that SpatialAnt significantly outperforms existing zero-shot methods. We achieve a 66% Success Rate (SR) on R2R-CE and 50.8% SR on RxR-CE benchmarks. Physical deployment on a Hello Robot further confirms the efficiency and efficacy of our framework, achieving a 52% SR in challenging real-world settings.

Sonia Horchidan, Fabian Zeiher, Xiangyu Shi et al.

Querying incomplete knowledge graphs with neural predictors is powerful but dangerous. Errors compound across multi-hop pipelines with no formal bound on the completeness of results. We introduce ConRAD, the first framework to enforce declarative recall guarantees natively within a neural graph database query engine. Given a user-specified risk budget, ConRAD automatically derives per-operator prediction thresholds that satisfy the recall target with finite-sample, distribution-free statistical validity via Conformal Risk Control, while maximizing end-to-end precision. To scale calibration across multi-operator query topologies, we introduce a quantile-space scalarization that reduces intractable high-dimensional threshold searches to a single parameter. We further design the conformal gate, a novel physical operator that dynamically bypasses neural inference when local graph evidence suffices, eliminating unnecessary model inferences in dense graph regions. Evaluated across three benchmarks and three query topologies, ConRAD strictly satisfies all risk budgets, with empirical recall falling below the target by at most 0.046 across all settings. It reduces neural invocations to zero in near-complete graph regions, and achieves precision that matches or exceeds best-case static baselines that offer no guarantees and require manual threshold search.

Xue Zhang, Xiangyu Shi, Xinyue Lou et al.

Large language models (LLMs) and multimodal large language models (MLLMs) have shown excellent general capabilities, even exhibiting adaptability in many professional domains such as law, economics, transportation, and medicine. Currently, many domain-specific benchmarks have been proposed to verify the performance of (M)LLMs in specific fields. Among various domains, transportation plays a crucial role in modern society as it impacts the economy, the environment, and the quality of life for billions of people. However, it is unclear how much traffic knowledge (M)LLMs possess and whether they can reliably perform transportation-related tasks. To address this gap, we propose TransportationGames, a carefully designed and thorough evaluation benchmark for assessing (M)LLMs in the transportation domain. By comprehensively considering the applications in real-world scenarios and referring to the first three levels in Bloom's Taxonomy, we test the performance of various (M)LLMs in memorizing, understanding, and applying transportation knowledge by the selected tasks. The experimental results show that although some models perform well in some tasks, there is still much room for improvement overall. We hope the release of TransportationGames can serve as a foundation for future research, thereby accelerating the implementation and application of (M)LLMs in the transportation domain.

Zhenyu Wang, Zikang Wang, Jiyue Jiang et al.

Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling, RNA structure prediction, protein function inference, and single-cell transcriptomics. Meanwhile, we also discuss several key challenges, including data scarcity, computational complexity, and cross-omics integration, and explore future directions such as multimodal learning, hybrid AI models, and clinical applications. By offering a comprehensive perspective, this paper underscores the transformative potential of LLMs in driving innovations in bioinformatics and precision medicine.

Jiyue Jiang, Pengan Chen, Jiuming Wang et al.

Large language models (LLMs) have become important tools in solving biological problems, offering improvements in accuracy and adaptability over conventional methods. Several benchmarks have been proposed to evaluate the performance of these LLMs. However, current benchmarks can hardly evaluate the performance of these models across diverse tasks effectively. In this paper, we introduce a comprehensive prompting-based benchmarking framework, termed Bio-benchmark, which includes 30 key bioinformatics tasks covering areas such as proteins, RNA, drugs, electronic health records, and traditional Chinese medicine. Using this benchmark, we evaluate six mainstream LLMs, including GPT-4o and Llama-3.1-70b, etc., using 0-shot and few-shot Chain-of-Thought (CoT) settings without fine-tuning to reveal their intrinsic capabilities. To improve the efficiency of our evaluations, we demonstrate BioFinder, a new tool for extracting answers from LLM responses, which increases extraction accuracy by round 30% compared to existing methods. Our benchmark results show the biological tasks suitable for current LLMs and identify specific areas requiring enhancement. Furthermore, we propose targeted prompt engineering strategies for optimizing LLM performance in these contexts. Based on these findings, we provide recommendations for the development of more robust LLMs tailored for various biological applications. This work offers a comprehensive evaluation framework and robust tools to support the application of LLMs in bioinformatics.

Xiangyu Shi, Zerui Li, Wenqi Lyu et al.

Vision-and-Language Navigation (VLN) in continuous environments requires agents to interpret natural language instructions while navigating unconstrained 3D spaces. Existing VLN-CE frameworks rely on a two-stage approach: a waypoint predictor to generate waypoints and a navigator to execute movements. However, current waypoint predictors struggle with spatial awareness, while navigators lack historical reasoning and backtracking capabilities, limiting adaptability. We propose a zero-shot VLN-CE framework integrating an enhanced waypoint predictor with a Multi-modal Large Language Model (MLLM)-based navigator. Our predictor employs a stronger vision encoder, masked cross-attention fusion, and an occupancy-aware loss for better waypoint quality. The navigator incorporates history-aware reasoning and adaptive path planning with backtracking, improving robustness. Experiments on R2R-CE and MP3D benchmarks show our method achieves state-of-the-art (SOTA) performance in zero-shot settings, demonstrating competitive results compared to fully supervised methods. Real-world validation on Turtlebot 4 further highlights its adaptability.

Yanting Li, Jiyue Jiang, Zikang Wang et al.

Inverse Protein Folding (IPF) is a critical subtask in the field of protein design, aiming to engineer amino acid sequences capable of folding correctly into a specified three-dimensional (3D) conformation. Although substantial progress has been achieved in recent years, existing methods generally rely on either backbone coordinates or molecular surface features alone, which restricts their ability to fully capture the complex chemical and geometric constraints necessary for precise sequence prediction. To address this limitation, we present DS-ProGen, a dual-structure deep language model for functional protein design, which integrates both backbone geometry and surface-level representations. By incorporating backbone coordinates as well as surface chemical and geometric descriptors into a next-amino-acid prediction paradigm, DS-ProGen is able to generate functionally relevant and structurally stable sequences while satisfying both global and local conformational constraints. On the PRIDE dataset, DS-ProGen attains the current state-of-the-art recovery rate of 61.47%, demonstrating the synergistic advantage of multi-modal structural encoding in protein design. Furthermore, DS-ProGen excels in predicting interactions with a variety of biological partners, including ligands, ions, and RNA, confirming its robust functional retention capabilities.

Xiangyu Shi, Yunlong Liang, Jinan Xu et al.

Recent works have proven the effectiveness of k-nearest-neighbor machine translation(a.k.a kNN-MT) approaches to produce remarkable improvement in cross-domain translations. However, these models suffer from heavy retrieve overhead on the entire datastore when decoding each token. We observe that during the decoding phase, about 67% to 84% of tokens are unvaried after searching over the corpus datastore, which means most of the tokens cause futile retrievals and introduce unnecessary computational costs by initiating k-nearest-neighbor searches. We consider this phenomenon is explainable in linguistics and propose a simple yet effective multi-layer perceptron (MLP) network to predict whether a token should be translated jointly by the neural machine translation model and probabilities produced by the kNN or just by the neural model. The results show that our method succeeds in reducing redundant retrieval operations and significantly reduces the overhead of kNN retrievals by up to 53% at the expense of a slight decline in translation quality. Moreover, our method could work together with all existing kNN-MT systems. This work has been accepted for publication in the jornal Advances in Artificial Intelligence and Machine Learning (ISSN: 2582-9793). The final published version can be found at DOI: https://dx.doi.org/10.54364/AAIML.2024.41111

Xiangyu Shi, Junyang Ding, Xu Zhao et al.

Computer-aided design (CAD) is vital to modern manufacturing, yet model creation remains labor-intensive and expertise-heavy. To enable non-experts to translate intuitive design intent into manufacturable artifacts, recent large language models-based text-to-CAD efforts focus on command sequences or script-based formats like CadQuery. However, these formats are kernel-dependent and lack universality for manufacturing. In contrast, the Standard for the Exchange of Product Data (STEP, ISO 10303) file is a widely adopted, neutral boundary representation (B-rep) format directly compatible with manufacturing, but its graph-structured, cross-referenced nature poses unique challenges for auto-regressive LLMs. To address this, we curate a dataset of ~40K STEP-caption pairs and introduce novel preprocessing tailored for the graph-structured format of STEP, including a depth-first search-based reserialization that linearizes cross-references while preserving locality and chain-of-thought(CoT)-style structural annotations that guide global coherence. We integrate retrieval-augmented generation to ground predictions in relevant examples for supervised fine-tuning, and refine generation quality through reinforcement learning with a specific Chamfer Distance-based geometric reward. Experiments demonstrate consistent gains of our STEP-LLM in geometric fidelity over the Text2CAD baseline, with improvements arising from multiple stages of our framework: the RAG module substantially enhances completeness and renderability, the DFS-based reserialization strengthens overall accuracy, and the RL further reduces geometric discrepancy. Both metrics and visual comparisons confirm that STEP-LLM generates shapes with higher fidelity than Text2CAD. These results show the feasibility of LLM-driven STEP model generation from natural language, showing its potential to democratize CAD design for manufacturing.

Simon Sinong Zhan, Yao Liu, Philip Wang et al.

We present Sentinel, the first framework for formally evaluating the physical safety of Large Language Model(LLM-based) embodied agents across the semantic, plan, and trajectory levels. Unlike prior methods that rely on heuristic rules or subjective LLM judgments, Sentinel grounds practical safety requirements in formal temporal logic (TL) semantics that can precisely specify state invariants, temporal dependencies, and timing constraints. It then employs a multi-level verification pipeline where (i) at the semantic level, intuitive natural language safety requirements are formalized into TL formulas and the LLM agent's understanding of these requirements is probed for alignment with the TL formulas; (ii) at the plan level, high-level action plans and subgoals generated by the LLM agent are verified against the TL formulas to detect unsafe plans before execution; and (iii) at the trajectory level, multiple execution trajectories are merged into a computation tree and efficiently verified against physically-detailed TL specifications for a final safety check. We apply Sentinel in VirtualHome and ALFRED, and formally evaluate multiple LLM-based embodied agents against diverse safety requirements. Our experiments show that by grounding physical safety in temporal logic and applying verification methods across multiple levels, Sentinel provides a rigorous foundation for systematically evaluating LLM-based embodied agents in physical environments, exposing safety violations overlooked by previous methods and offering insights into their failure modes.

Xiangyu Shi, Marco Chiesa, Gerald Q. Maguire et al.

Large Language Models (LLMs) are increasingly deployed in multi-agent systems, where effective inter-model communication is crucial. Existing communication protocols either rely on natural language, incurring high inference costs and information loss, or on hidden states, which suffer from information concentration bias and inefficiency. To address these limitations, we propose KVComm, a novel communication framework that enables efficient communication between LLMs through selective sharing of KV pairs. KVComm leverages the rich information encoded in the KV pairs while avoiding the pitfalls of hidden states. We introduce a KV layer-wise selection strategy based on attention importance scores with a Gaussian prior to identify the most informative KV pairs for communication. Extensive experiments across diverse tasks and model pairs demonstrate that KVComm achieves comparable performance to the upper-bound method, which directly merges inputs to one model without any communication, while transmitting as few as 30\% of layers' KV pairs. Our study highlights the potential of KV pairs as an effective medium for inter-LLM communication, paving the way for scalable and efficient multi-agent systems.

Xiangyu Shi, Yanyuan Qiao, Lingqiao Liu et al.

Mobile robots rely on object detectors for perception and object localization in indoor environments. However, standard closed-set methods struggle to handle the diverse objects and dynamic conditions encountered in real homes and labs. Open-vocabulary object detection (OVOD), driven by Vision Language Models (VLMs), extends beyond fixed labels but still struggles with domain shifts in indoor environments. We introduce a Source-Free Domain Adaptation (SFDA) approach that adapts a pre-trained model without accessing source data. We refine pseudo labels via temporal clustering, employ multi-scale threshold fusion, and apply a Mean Teacher framework with contrastive learning. Our Embodied Domain Adaptation for Object Detection (EDAOD) benchmark evaluates adaptation under sequential changes in lighting, layout, and object diversity. Our experiments show significant gains in zero-shot detection performance and flexible adaptation to dynamic indoor conditions.

Simon Sinong Zhan, Qingyuan Wu, Frank Yang et al.

Offline-to-online deployment of reinforcement-learning (RL) agents must bridge two gaps: (1) the sim-to-real gap, where real systems add latency and other imperfections not present in simulation, and (2) the interaction gap, where policies trained purely offline face out-of-distribution states during online execution because gathering new interaction data is costly or risky. Agents therefore have to generalize from static, delay-free datasets to dynamic, delay-prone environments. Standard offline RL learns from delay-free logs yet must act under delays that break the Markov assumption and hurt performance. We introduce DT-CORL (Delay-Transformer belief policy Constrained Offline RL), an offline-RL framework built to cope with delayed dynamics at deployment. DT-CORL (i) produces delay-robust actions with a transformer-based belief predictor even though it never sees delayed observations during training, and (ii) is markedly more sample-efficient than naïve history-augmentation baselines. Experiments on D4RL benchmarks with several delay settings show that DT-CORL consistently outperforms both history-augmentation and vanilla belief-based methods, narrowing the sim-to-real latency gap while preserving data efficiency.

Hongcheng Ding, Xiangyu Shi, Ruiting Deng et al.

This study introduces a novel approach for EUR/USD exchange rate forecasting that integrates deep learning, textual analysis, and particle swarm optimization (PSO). By incorporating online news and analysis texts as qualitative data, the proposed PSO-LSTM model demonstrates superior performance compared to traditional econometric and machine learning models. The research employs advanced text mining techniques, including sentiment analysis using the RoBERTa-Large model and topic modeling with LDA. Empirical findings underscore the significant advantage of incorporating textual data, with the PSO-LSTM model outperforming benchmark models such as SVM, SVR, ARIMA, and GARCH. Ablation experiments reveal the contribution of each textual data category to the overall forecasting performance. The study highlights the transformative potential of artificial intelligence in finance and paves the way for future research in real-time forecasting and the integration of alternative data sources.

Chunnan Wang, Hongzhi Wang, Xiangyu Shi

Model compression methods can reduce model complexity on the premise of maintaining acceptable performance, and thus promote the application of deep neural networks under resource constrained environments. Despite their great success, the selection of suitable compression methods and design of details of the compression scheme are difficult, requiring lots of domain knowledge as support, which is not friendly to non-expert users. To make more users easily access to the model compression scheme that best meet their needs, in this paper, we propose AutoMC, an effective automatic tool for model compression. AutoMC builds the domain knowledge on model compression to deeply understand the characteristics and advantages of each compression method under different settings. In addition, it presents a progressive search strategy to efficiently explore pareto optimal compression scheme according to the learned prior knowledge combined with the historical evaluation information. Extensive experimental results show that AutoMC can provide satisfying compression schemes within short time, demonstrating the effectiveness of AutoMC.