Joanna Zou

Joanna Zou, Fraser Birks, Dallas Foster et al.

Machine learning interatomic potentials (MLIPs) enable efficient and accurate atomistic simulations but depend critically on the quality and diversity of the training data. We introduce Stein kernelized molecular dynamics (SKMD), an enhanced sampling method that uses interacting particle dynamics to acquire informative training configurations for the active learning and fine-tuning of MLIPs. SKMD corresponds to a stochastic variant of Stein variational gradient descent that is adapted for molecular dynamics by incorporating asynchronous particle updates and a kernel of global atomic descriptors, which provides a symmetry-aware measure of configurational similarity. Unlike other enhanced samplers used in molecular dynamics, SKMD preserves the Boltzmann distribution as the asymptotic distribution of the dynamics. This property enforces a balance between the exploration of diverse configurations and attraction toward high-probability regions of the energy landscape. We further propose an approach to efficient online data acquisition using an adaptive stopping criterion that selects non-redundant training data over the course of simulation. We demonstrate SKMD for the active learning of a neural network model of the Müller-Brown potential and the fine-tuning of a MACE interatomic potential for alanine dipeptide. Compared to active learning baselines, our method achieves higher model accuracy in fewer training iterations with the same number of acquired training samples.

Joanna Zou, Youssef Marzouk

The development of machine learning interatomic potentials faces a critical computational bottleneck with the generation and labeling of useful training datasets. We present a novel application of determinantal point processes (DPPs) to the task of selecting informative subsets of atomic configurations to label with reference energies and forces from costly quantum mechanical methods. Through experiments with hafnium oxide data, we show that DPPs are competitive with existing approaches to constructing compact but diverse training sets by utilizing kernels of molecular descriptors, leading to improved accuracy and robustness in machine learning representations of molecular systems. Our work identifies promising directions to employ DPPs for unsupervised training data curation with heterogeneous or multimodal data, or in online active learning schemes for iterative data augmentation during molecular dynamics simulation.

Joanna Zou, Han Cheng Lie, Youssef Marzouk

The governing equations of stochastic dynamical systems often become cost-prohibitive for numerical simulation at large scales. Surrogate models of the governing equations, learned from data of the high-fidelity system, are routinely used to predict key observables with greater efficiency. However, standard choices of loss function for learning the surrogate model fail to provide error guarantees in path-dependent observables, such as reaction rates of molecular dynamical systems. This paper introduces an error bound for path-space observables and employs it as a novel variational loss for the goal-oriented learning of a stochastic dynamical system. We show the error bound holds for a broad class of observables, including mean first hitting times on unbounded time domains. We derive an analytical gradient of the goal-oriented loss function by leveraging the formula for Frechet derivatives of expected path functionals, which remains tractable for implementation in stochastic gradient descent schemes. We demonstrate that surrogate models of overdamped Langevin systems developed via goal-oriented learning achieve improved accuracy in predicting the statistics of a first hitting time observable and robustness to distributional shift in the data.