Simon Lyddon

Edwin Fong, Simon Lyddon, Chris Holmes

Increasingly complex datasets pose a number of challenges for Bayesian inference. Conventional posterior sampling based on Markov chain Monte Carlo can be too computationally intensive, is serial in nature and mixes poorly between posterior modes. Further, all models are misspecified, which brings into question the validity of the conventional Bayesian update. We present a scalable Bayesian nonparametric learning routine that enables posterior sampling through the optimization of suitably randomized objective functions. A Dirichlet process prior on the unknown data distribution accounts for model misspecification, and admits an embarrassingly parallel posterior bootstrap algorithm that generates independent and exact samples from the nonparametric posterior distribution. Our method is particularly adept at sampling from multimodal posterior distributions via a random restart mechanism. We demonstrate our method on Gaussian mixture model and sparse logistic regression examples.

S. P. Lyddon, S. G. Walker, C. C. Holmes

Bayesian learning is built on an assumption that the model space contains a true reflection of the data generating mechanism. This assumption is problematic, particularly in complex data environments. Here we present a Bayesian nonparametric approach to learning that makes use of statistical models, but does not assume that the model is true. Our approach has provably better properties than using a parametric model and admits a Monte Carlo sampling scheme that can afford massive scalability on modern computer architectures. The model-based aspect of learning is particularly attractive for regularizing nonparametric inference when the sample size is small, and also for correcting approximate approaches such as variational Bayes (VB). We demonstrate the approach on a number of examples including VB classifiers and Bayesian random forests.

Simon Lyddon, Chris Holmes, Stephen Walker

In this paper we revisit the weighted likelihood bootstrap, a method that generates samples from an approximate Bayesian posterior of a parametric model. We show that the same method can be derived, without approximation, under a Bayesian nonparametric model with the parameter of interest defined as minimising an expected negative log-likelihood under an unknown sampling distribution. This interpretation enables us to extend the weighted likelihood bootstrap to posterior sampling for parameters minimizing an expected loss. We call this method the loss-likelihood bootstrap. We make a connection between this and general Bayesian updating, which is a way of updating prior belief distributions without needing to construct a global probability model, yet requires the calibration of two forms of loss function. The loss-likelihood bootstrap is used to calibrate the general Bayesian posterior by matching asymptotic Fisher information. We demonstrate the methodology on a number of examples.