Elena Loli Piccolomini

Davide Evangelista, James Nagy, Elena Morotti et al.

The solution of linear inverse problems arising, for example, in signal and image processing is a challenging problem since the ill-conditioning amplifies, in the solution, the noise present in the data. Recently introduced algorithms based on deep learning overwhelm the more traditional model-based approaches in performance, but they typically suffer from instability with respect to data perturbation. In this paper, we theoretically analyze the trade-off between stability and accuracy of neural networks, when used to solve linear imaging inverse problems for not under-determined cases. Moreover, we propose different supervised and unsupervised solutions to increase the network stability and maintain a good accuracy, by means of regularization properties inherited from a model-based iterative scheme during the network training and pre-processing stabilizing operator in the neural networks. Extensive numerical experiments on image deblurring confirm the theoretical results and the effectiveness of the proposed deep learning-based approaches to handle noise on the data.

Fabio Merizzi, Perrine Saillard, Oceane Acquier et al.

The unprecedented success of image reconstruction approaches based on deep neural networks has revolutionised both the processing and the analysis paradigms in several applied disciplines. In the field of digital humanities, the task of digital reconstruction of ancient frescoes is particularly challenging due to the scarce amount of available training data caused by ageing, wear, tear and retouching over time. To overcome these difficulties, we consider the Deep Image Prior (DIP) inpainting approach which computes appropriate reconstructions by relying on the progressive updating of an untrained convolutional neural network so as to match the reliable piece of information in the image at hand while promoting regularisation elsewhere. In comparison with state-of-the-art approaches (based on variational/PDEs and patch-based methods), DIP-based inpainting reduces artefacts and better adapts to contextual/non-local information, thus providing a valuable and effective tool for art historians. As a case study, we apply such approach to reconstruct missing image contents in a dataset of highly damaged digital images of medieval paintings located into several chapels in the Mediterranean Alpine Arc and provide a detailed description on how visible and invisible (e.g., infrared) information can be integrated for identifying and reconstructing damaged image regions.

Davide Evangelista, Pasquale Cascarano, Elena Loli Piccolomini

The reconstruction of X-rays CT images from sparse or limited-angle geometries is a highly challenging task. The lack of data typically results in artifacts in the reconstructed image and may even lead to object distortions. For this reason, the use of deep generative models in this context has great interest and potential success. In the Deep Generative Prior (DGP) framework, the use of diffusion-based generative models is combined with an iterative optimization algorithm for the reconstruction of CT images from sinograms acquired under sparse geometries, to maintain the explainability of a model-based approach while introducing the generative power of a neural network. There are therefore several aspects that can be further investigated within these frameworks to improve reconstruction quality, such as image generation, the model, and the iterative algorithm used to solve the minimization problem, for which we propose modifications with respect to existing approaches. The results obtained even under highly sparse geometries are very promising, although further research is clearly needed in this direction.

Isabella Marasco, Davide Evangelista, Elena Loli Piccolomini et al.

Artificial intelligence systems predominantly rely on static data distributions, making them ineffective in dynamic real-world environments, such as cybersecurity, autonomous transportation, or finance, where data shifts frequently. Continual learning offers a potential solution by enabling models to learn from sequential data while retaining prior knowledge. However, a critical and underexplored issue in this domain is data normalization. Conventional normalization methods, such as min-max scaling, presuppose access to the entire dataset, which is incongruent with the sequential nature of continual learning. In this paper we introduce Continual Learning Adaptive Normalization (CLeAN), a novel adaptive normalization technique designed for continual learning in tabular data. CLeAN involves the estimation of global feature scales using learnable parameters that are updated via an Exponential Moving Average (EMA) module, enabling the model to adapt to evolving data distributions. Through comprehensive evaluations on two datasets and various continual learning strategies, including Resevoir Experience Replay, A-GEM, and EwC we demonstrate that CLeAN not only improves model performance on new data but also mitigates catastrophic forgetting. The findings underscore the importance of adaptive normalization in enhancing the stability and effectiveness of tabular data, offering a novel perspective on the use of normalization to preserve knowledge in dynamic learning environments.

Elena Morotti, Davide Evangelista, Andrea Sebastiani et al.

This paper focuses on the development of a space-variant regularization model for solving an under-determined linear inverse problem. The case study is a medical image reconstruction from few-view tomographic noisy data. The primary objective of the proposed optimization model is to achieve a good balance between denoising and the preservation of fine details and edges, overcoming the performance of the popular and largely used Total Variation (TV) regularization through the application of appropriate pixel-dependent weights. The proposed strategy leverages the role of gradient approximations for the computation of the space-variant TV weights. For this reason, a convolutional neural network is designed, to approximate both the ground truth image and its gradient using an elastic loss function in its training. Additionally, the paper provides a theoretical analysis of the proposed model, showing the uniqueness of its solution, and illustrates a Chambolle-Pock algorithm tailored to address the specific problem at hand. This comprehensive framework integrates innovative regularization techniques with advanced neural network capabilities, demonstrating promising results in achieving high-quality reconstructions from low-sampled tomographic data.

Elena Loli Piccolomini, Davide Evangelista, Elena Morotti

Sparse-view Computed Tomography (CT) is an emerging protocol designed to reduce X-ray dose radiation in medical imaging. Traditional Filtered Back Projection algorithm reconstructions suffer from severe artifacts due to sparse data. In contrast, Model-Based Iterative Reconstruction (MBIR) algorithms, though better at mitigating noise through regularization, are too computationally costly for clinical use. This paper introduces a novel technique, denoted as the Deep Guess acceleration scheme, using a trained neural network both to quicken the regularized MBIR and to enhance the reconstruction accuracy. We integrate state-of-the-art deep learning tools to initialize a clever starting guess for a proximal algorithm solving a non-convex model and thus computing an interpretable solution image in a few iterations. Experimental results on real CT images demonstrate the Deep Guess effectiveness in (very) sparse tomographic protocols, where it overcomes its mere variational counterpart and many data-driven approaches at the state of the art. We also consider a ground truth-free implementation and test the robustness of the proposed framework to noise.

Chu Chen, Kangning Cui, Pasquale Cascarano et al.

Ultrasound imaging is widely applied in clinical practice, yet ultrasound videos often suffer from low signal-to-noise ratios (SNR) and limited resolutions, posing challenges for diagnosis and analysis. Variations in equipment and acquisition settings can further exacerbate differences in data distribution and noise levels, reducing the generalizability of pre-trained models. This work presents a self-supervised ultrasound video super-resolution algorithm called Deep Ultrasound Prior (DUP). DUP employs a video-adaptive optimization process of a neural network that enhances the resolution of given ultrasound videos without requiring paired training data while simultaneously removing noise. Quantitative and visual evaluations demonstrate that DUP outperforms existing super-resolution algorithms, leading to substantial improvements for downstream applications.

Davide Evangelista, Elena Morotti, Elena Loli Piccolomini et al.

In recent years, large convolutional neural networks have been widely used as tools for image deblurring, because of their ability in restoring images very precisely. It is well known that image deblurring is mathematically modeled as an ill-posed inverse problem and its solution is difficult to approximate when noise affects the data. Really, one limitation of neural networks for deblurring is their sensitivity to noise and other perturbations, which can lead to instability and produce poor reconstructions. In addition, networks do not necessarily take into account the numerical formulation of the underlying imaging problem, when trained end-to-end. In this paper, we propose some strategies to improve stability without losing to much accuracy to deblur images with deep-learning based methods. First, we suggest a very small neural architecture, which reduces the execution time for training, satisfying a green AI need, and does not extremely amplify noise in the computed image. Second, we introduce a unified framework where a pre-processing step balances the lack of stability of the following, neural network-based, step. Two different pre-processors are presented: the former implements a strong parameter-free denoiser, and the latter is a variational model-based regularized formulation of the latent imaging problem. This framework is also formally characterized by mathematical analysis. Numerical experiments are performed to verify the accuracy and stability of the proposed approaches for image deblurring when unknown or not-quantified noise is present; the results confirm that they improve the network stability with respect to noise. In particular, the model-based framework represents the most reliable trade-off between visual precision and robustness.

Pasquale Cascarano, Maria Colomba Comes, Andrea Sebastiani et al.

In fluorescence microscopy, Single Molecule Localization Microscopy (SMLM) techniques aim at localizing with high precision high density fluorescent molecules by stochastically activating and imaging small subsets of blinking emitters. Super Resolution (SR) plays an important role in this field since it allows to go beyond the intrinsic light diffraction limit. In this work, we propose a deep learning-based algorithm for precise molecule localization of high density frames acquired by SMLM techniques whose $\ell_{2}$-based loss function is regularized by positivity and $\ell_{0}$-based constraints. The $\ell_{0}$ is relaxed through its Continuous Exact $\ell_{0}$ (CEL0) counterpart. The arising approach, named DeepCEL0, is parameter-free, more flexible, faster and provides more precise molecule localization maps if compared to the other state-of-the-art methods. We validate our approach on both simulated and real fluorescence microscopy data.

Pasquale Cascarano, Elena Loli Piccolomini, Elena Morotti et al.

Blur and noise corrupting Computed Tomography (CT) images can hide or distort small but important details, negatively affecting the diagnosis. In this paper, we present a novel gradient-based Plug-and-Play algorithm, constructed on the Half-Quadratic Splitting scheme, and we apply it to restore CT images. In particular, we consider different schemes encompassing external and internal denoisers as priors, defined on the image gradient domain. The internal prior is based on the Total Variation functional. The external denoiser is implemented by a deep Convolutional Neural Network (CNN) trained on the gradient domain (and not on the image one, as in state-of-the-art works). We also prove a general fixed-point convergence theorem under weak assumptions on both internal and external denoisers. The experiments confirm the effectiveness of the proposed framework in restoring blurred noisy CT images, both in simulated and real medical settings. The achieved enhancements in the restored images are really remarkable, if compared to the results of many state-of-the-art methods.

Pasquale Cascarano, Maria Colomba Comes, Arianna Mencattini et al.

Biological experiments based on organ-on-chips (OOCs) exploit light Time-Lapse Microscopy (TLM) for a direct observation of cell movement that is an observable signature of underlying biological processes. A high spatial resolution is essential to capture cell dynamics and interactions from recorded experiments by TLM. Unfortunately, due to physical and cost limitations, acquiring high resolution videos is not always possible. To overcome the problem, we present here a new deep learning-based algorithm that extends the well known Deep Image Prior (DIP) to TLM Video Super Resolution (SR) without requiring any training. The proposed Recursive Deep Prior Video (RDPV) method introduces some novelties. The weights of the DIP network architecture are initialized for each of the frames according to a new recursive updating rule combined with an efficient early stopping criterion. Moreover, the DIP loss function is penalized by two different Total Variation (TV) based terms. The method has been validated on synthetic, i.e., artificially generated, as well as real videos from OOC experiments related to tumor-immune interaction. Achieved results are compared with several state-of-the-art trained deep learning SR algorithms showing outstanding performances.

Damiana Lazzaro, Elena Loli Piccolomini, Fabiana Zama

In this paper we present a fast and efficient method for the reconstruction of Magnetic Resonance Images (MRI) from severely under-sampled data. From the Compressed Sensing theory we have mathematically modeled the problem as a constrained minimization problem with a family of non-convex regularizing objective functions depending on a parameter and a least squares data fit constraint. We propose a fast and efficient algorithm, named Fast NonConvex Reweighting (FNCR) algorithm, based on an iterative scheme where the non-convex problem is approximated by its convex linearization and the penalization parameter is automatically updated. The convex problem is solved by a Forward-Backward procedure, where the Backward step is performed by a Split Bregman strategy. Moreover, we propose a new efficient iterative solver for the arising linear systems. We prove the convergence of the proposed FNCR method. The results on synthetic phantoms and real images show that the algorithm is very well performing and computationally efficient, even when compared to the best performing methods proposed in the literature.