Xin Gao

Xin Gao, Cheng Yang, Chufan Shi et al.

Unified multimodal models (UMMs) have emerged as a promising paradigm for general-purpose multimodal intelligence. As they are deployed in real-world applications, effectively updating internal knowledge becomes critical. While knowledge editing has matured for text-only models, it remains unclear whether edits that successfully modify textual outputs also transfer to image generation in UMMs. To study this question, we introduce UniKE, the first benchmark for cross-modality knowledge editing in UMMs, comprising 2,971 edit subjects spanning attribute and relation edits. Using VQA-based visual verification, we reveal a striking modality gap: text-side efficacy can reach approximately 92%, whereas the best overall VQA accuracy under direct image generation is only 18.5%. We further propose Reasoning-augmented Parameter Editing, which explicitly activates edited knowledge before generation and improves overall VQA accuracy for all evaluated model-editor pairs, with gains up to 18.6 percentage points. Mechanistic analysis shows that this gap is associated with partial alignment between edited textual representations and the conditioning pathways for visual generation, where edits sufficient for text outputs may remain too weak or misaligned to steer image synthesis. These findings show that textual knowledge edits do not guarantee reliable cross-modality transfer and motivate modality-aware editing methods. Our code and data are available at https://github.com/gxx27/UniKE.

Juexiao Zhou, Longxi Zhou, Di Wang et al. · tsinghua

Heterogeneous data is endemic due to the use of diverse models and settings of devices by hospitals in the field of medical imaging. However, there are few open-source frameworks for federated heterogeneous medical image analysis with personalization and privacy protection simultaneously without the demand to modify the existing model structures or to share any private data. In this paper, we proposed PPPML-HMI, an open-source learning paradigm for personalized and privacy-preserving federated heterogeneous medical image analysis. To our best knowledge, personalization and privacy protection were achieved simultaneously for the first time under the federated scenario by integrating the PerFedAvg algorithm and designing our novel cyclic secure aggregation with the homomorphic encryption algorithm. To show the utility of PPPML-HMI, we applied it to a simulated classification task namely the classification of healthy people and patients from the RAD-ChestCT Dataset, and one real-world segmentation task namely the segmentation of lung infections from COVID-19 CT scans. For the real-world task, PPPML-HMI achieved $\sim$5\% higher Dice score on average compared to conventional FL under the heterogeneous scenario. Meanwhile, we applied the improved deep leakage from gradients to simulate adversarial attacks and showed the solid privacy-preserving capability of PPPML-HMI. By applying PPPML-HMI to both tasks with different neural networks, a varied number of users, and sample sizes, we further demonstrated the strong robustness of PPPML-HMI.

Juexiao Zhou, Haoyang Li, Xingyu Liao et al. · tsinghua

Revoking personal private data is one of the basic human rights, which has already been sheltered by several privacy-preserving laws in many countries. However, with the development of data science, machine learning and deep learning techniques, this right is usually neglected or violated as more and more patients' data are being collected and used for model training, especially in intelligent healthcare, thus making intelligent healthcare a sector where technology must meet the law, regulations, and privacy principles to ensure that the innovation is for the common good. In order to secure patients' right to be forgotten, we proposed a novel solution by using auditing to guide the forgetting process, where auditing means determining whether a dataset has been used to train the model and forgetting requires the information of a query dataset to be forgotten from the target model. We unified these two tasks by introducing a new approach called knowledge purification. To implement our solution, we developed AFS, a unified open-source software, which is able to evaluate and revoke patients' private data from pre-trained deep learning models. We demonstrated the generality of AFS by applying it to four tasks on different datasets with various data sizes and architectures of deep learning networks. The software is publicly available at \url{https://github.com/JoshuaChou2018/AFS}.

Shubo Tian, Qiao Jin, Lana Yeganova et al. · tsinghua

ChatGPT has drawn considerable attention from both the general public and domain experts with its remarkable text generation capabilities. This has subsequently led to the emergence of diverse applications in the field of biomedicine and health. In this work, we examine the diverse applications of large language models (LLMs), such as ChatGPT, in biomedicine and health. Specifically we explore the areas of biomedical information retrieval, question answering, medical text summarization, information extraction, and medical education, and investigate whether LLMs possess the transformative power to revolutionize these tasks or whether the distinct complexities of biomedical domain presents unique challenges. Following an extensive literature survey, we find that significant advances have been made in the field of text generation tasks, surpassing the previous state-of-the-art methods. For other applications, the advances have been modest. Overall, LLMs have not yet revolutionized biomedicine, but recent rapid progress indicates that such methods hold great potential to provide valuable means for accelerating discovery and improving health. We also find that the use of LLMs, like ChatGPT, in the fields of biomedicine and health entails various risks and challenges, including fabricated information in its generated responses, as well as legal and privacy concerns associated with sensitive patient data. We believe this survey can provide a comprehensive and timely overview to biomedical researchers and healthcare practitioners on the opportunities and challenges associated with using ChatGPT and other LLMs for transforming biomedicine and health.

Yifan Gao, Wei Xia, Dingdu Hu et al.

Deep learning-based medical image segmentation models often suffer from domain shift, where the models trained on a source domain do not generalize well to other unseen domains. As a prompt-driven foundation model with powerful generalization capabilities, the Segment Anything Model (SAM) shows potential for improving the cross-domain robustness of medical image segmentation. However, SAM performs significantly worse in automatic segmentation scenarios than when manually prompted, hindering its direct application to domain generalization. Upon further investigation, we discovered that the degradation in performance was related to the coupling effect of inevitable poor prompts and mask generation. To address the coupling effect, we propose the Decoupled SAM (DeSAM). DeSAM modifies SAM's mask decoder by introducing two new modules: a prompt-relevant IoU module (PRIM) and a prompt-decoupled mask module (PDMM). PRIM predicts the IoU score and generates mask embeddings, while PDMM extracts multi-scale features from the intermediate layers of the image encoder and fuses them with the mask embeddings from PRIM to generate the final segmentation mask. This decoupled design allows DeSAM to leverage the pre-trained weights while minimizing the performance degradation caused by poor prompts. We conducted experiments on publicly available cross-site prostate and cross-modality abdominal image segmentation datasets. The results show that our DeSAM leads to a substantial performance improvement over previous state-of-theart domain generalization methods. The code is publicly available at https://github.com/yifangao112/DeSAM.

Xiuying Chen, Hind Alamro, Mingzhe Li et al. · pku

The related work section is an important component of a scientific paper, which highlights the contribution of the target paper in the context of the reference papers. Authors can save their time and effort by using the automatically generated related work section as a draft to complete the final related work. Most of the existing related work section generation methods rely on extracting off-the-shelf sentences to make a comparative discussion about the target work and the reference papers. However, such sentences need to be written in advance and are hard to obtain in practice. Hence, in this paper, we propose an abstractive target-aware related work generator (TAG), which can generate related work sections consisting of new sentences. Concretely, we first propose a target-aware graph encoder, which models the relationships between reference papers and the target paper with target-centered attention mechanisms. In the decoding process, we propose a hierarchical decoder that attends to the nodes of different levels in the graph with keyphrases as semantic indicators. Finally, to generate a more informative related work, we propose multi-level contrastive optimization objectives, which aim to maximize the mutual information between the generated related work with the references and minimize that with non-references. Extensive experiments on two public scholar datasets show that the proposed model brings substantial improvements over several strong baselines in terms of automatic and tailored human evaluations.

Xiangchen Yin, Zhenda Yu, Zetao Fei et al.

Current object detection models have achieved good results on many benchmark datasets, detecting objects in dark conditions remains a large challenge. To address this issue, we propose a pyramid enhanced network (PENet) and joint it with YOLOv3 to build a dark object detection framework named PE-YOLO. Firstly, PENet decomposes the image into four components of different resolutions using the Laplacian pyramid. Specifically we propose a detail processing module (DPM) to enhance the detail of images, which consists of context branch and edge branch. In addition, we propose a low-frequency enhancement filter (LEF) to capture low-frequency semantics and prevent high-frequency noise. PE-YOLO adopts an end-to-end joint training approach and only uses normal detection loss to simplify the training process. We conduct experiments on the low-light object detection dataset ExDark to demonstrate the effectiveness of ours. The results indicate that compared with other dark detectors and low-light enhancement models, PE-YOLO achieves the advanced results, achieving 78.0% in mAP and 53.6 in FPS, respectively, which can adapt to object detection under different low-light conditions. The code is available at https://github.com/XiangchenYin/PE-YOLO.

Junbo Yin, Jianbing Shen, Xin Gao et al.

Previous works for LiDAR-based 3D object detection mainly focus on the single-frame paradigm. In this paper, we propose to detect 3D objects by exploiting temporal information in multiple frames, i.e., the point cloud videos. We empirically categorize the temporal information into short-term and long-term patterns. To encode the short-term data, we present a Grid Message Passing Network (GMPNet), which considers each grid (i.e., the grouped points) as a node and constructs a k-NN graph with the neighbor grids. To update features for a grid, GMPNet iteratively collects information from its neighbors, thus mining the motion cues in grids from nearby frames. To further aggregate the long-term frames, we propose an Attentive Spatiotemporal Transformer GRU (AST-GRU), which contains a Spatial Transformer Attention (STA) module and a Temporal Transformer Attention (TTA) module. STA and TTA enhance the vanilla GRU to focus on small objects and better align the moving objects. Our overall framework supports both online and offline video object detection in point clouds. We implement our algorithm based on prevalent anchor-based and anchor-free detectors. The evaluation results on the challenging nuScenes benchmark show the superior performance of our method, achieving the 1st on the leaderboard without any bells and whistles, by the time the paper is submitted.

Yan Li, Zezi Zeng, Ziwei Zhou et al.

Recent advances in image generation models have expanded their applications beyond aesthetic imagery toward practical visual content creation. However, existing benchmarks mainly focus on natural image synthesis and fail to systematically evaluate models under the structured and multi-constraint requirements of real-world commercial design tasks. In this work, we introduce BizGenEval, a systematic benchmark for commercial visual content generation. The benchmark spans five representative document types: slides, charts, webpages, posters, and scientific figures, and evaluates four key capability dimensions: text rendering, layout control, attribute binding, and knowledge-based reasoning, forming 20 diverse evaluation tasks. BizGenEval contains 400 carefully curated prompts and 8000 human-verified checklist questions to rigorously assess whether generated images satisfy complex visual and semantic constraints. We conduct large-scale benchmarking on 26 popular image generation systems, including state-of-the-art commercial APIs and leading open-source models. The results reveal substantial capability gaps between current generative models and the requirements of professional visual content creation. We hope BizGenEval serves as a standardized benchmark for real-world commercial visual content generation.

Jiajun Xu, Zhiyuan Li, Wei Chen et al.

The advent of large language models (LLMs) revolutionized natural language processing applications, and running LLMs on edge devices has become increasingly attractive for reasons including reduced latency, data localization, and personalized user experiences. This comprehensive review examines the challenges of deploying computationally expensive LLMs on resource-constrained devices and explores innovative solutions across multiple domains. The paper investigates the development of on-device language models, their efficient architectures, including parameter sharing and modular designs, as well as state-of-the-art compression techniques like quantization, pruning, and knowledge distillation. Hardware acceleration strategies and collaborative edge-cloud deployment approaches are analyzed, highlighting the intricate balance between performance and resource utilization. Case studies of on-device language models from major mobile manufacturers demonstrate real-world applications and potential benefits. The review also addresses critical aspects such as adaptive learning, multi-modal capabilities, and personalization. By identifying key research directions and open challenges, this paper provides a roadmap for future advancements in on-device language models, emphasizing the need for interdisciplinary efforts to realize the full potential of ubiquitous, intelligent computing while ensuring responsible and ethical deployment. For a comprehensive review of research work and educational resources on on-device large language models (LLMs), please visit https://github.com/NexaAI/Awesome-LLMs-on-device. To download and run on-device LLMs, visit https://www.nexaai.com/models.

Juexiao Zhou, Xiuying Chen, Xin Gao

Medical artificial general intelligence (AGI) is an emerging field that aims to develop systems specifically designed for medical applications that possess the ability to understand, learn, and apply knowledge across a wide range of tasks and domains. Large language models (LLMs) represent a significant step towards AGI. However, training cross-domain LLMs in the medical field poses significant challenges primarily attributed to the requirement of collecting data from diverse domains. This task becomes particularly difficult due to privacy restrictions and the scarcity of publicly available medical datasets. Here, we propose Medical AGI (MedAGI), a paradigm to unify domain-specific medical LLMs with the lowest cost, and suggest a possible path to achieve medical AGI. With an increasing number of domain-specific professional multimodal LLMs in the medical field being developed, MedAGI is designed to automatically select appropriate medical models by analyzing users' questions with our novel adaptive expert selection algorithm. It offers a unified approach to existing LLMs in the medical field, eliminating the need for retraining regardless of the introduction of new models. This characteristic renders it a future-proof solution in the dynamically advancing medical domain. To showcase the resilience of MedAGI, we conducted an evaluation across three distinct medical domains: dermatology diagnosis, X-ray diagnosis, and analysis of pathology pictures. The results demonstrated that MedAGI exhibited remarkable versatility and scalability, delivering exceptional performance across diverse domains. Our code is publicly available to facilitate further research at https://github.com/JoshuaChou2018/MedAGI.

Xiuying Chen, Mingzhe Li, Shen Gao et al. · pku

Nowadays, time-stamped web documents related to a general news query floods spread throughout the Internet, and timeline summarization targets concisely summarizing the evolution trajectory of events along the timeline. Unlike traditional document summarization, timeline summarization needs to model the time series information of the input events and summarize important events in chronological order. To tackle this challenge, in this paper, we propose a Unified Timeline Summarizer (UTS) that can generate abstractive and extractive timeline summaries in time order. Concretely, in the encoder part, we propose a graph-based event encoder that relates multiple events according to their content dependency and learns a global representation of each event. In the decoder part, to ensure the chronological order of the abstractive summary, we propose to extract the feature of event-level attention in its generation process with sequential information remained and use it to simulate the evolutionary attention of the ground truth summary. The event-level attention can also be used to assist in extracting summary, where the extracted summary also comes in time sequence. We augment the previous Chinese large-scale timeline summarization dataset and collect a new English timeline dataset. Extensive experiments conducted on these datasets and on the out-of-domain Timeline 17 dataset show that UTS achieves state-of-the-art performance in terms of both automatic and human evaluations.

Xiuying Chen, Mingzhe Li, Xin Gao et al.

Despite the success achieved in neural abstractive summarization based on pre-trained language models, one unresolved issue is that the generated summaries are not always faithful to the input document. There are two possible causes of the unfaithfulness problem: (1) the summarization model fails to understand or capture the gist of the input text, and (2) the model over-relies on the language model to generate fluent but inadequate words. In this work, we propose a Faithfulness Enhanced Summarization model (FES), which is designed for addressing these two problems and improving faithfulness in abstractive summarization. For the first problem, we propose to use question-answering (QA) to examine whether the encoder fully grasps the input document and can answer the questions on the key information in the input. The QA attention on the proper input words can also be used to stipulate how the decoder should attend to the source. For the second problem, we introduce a max-margin loss defined on the difference between the language and the summarization model, aiming to prevent the overconfidence of the language model. Extensive experiments on two benchmark summarization datasets, CNN/DM and XSum, demonstrate that our model significantly outperforms strong baselines. The evaluation of factual consistency also shows that our model generates more faithful summaries than baselines.

Gongning Luo, Kuanquan Wang, Jun Liu et al.

Efficient automatic segmentation of multi-level (i.e. main and branch) pulmonary arteries (PA) in CTPA images plays a significant role in clinical applications. However, most existing methods concentrate only on main PA or branch PA segmentation separately and ignore segmentation efficiency. Besides, there is no public large-scale dataset focused on PA segmentation, which makes it highly challenging to compare the different methods. To benchmark multi-level PA segmentation algorithms, we organized the first \textbf{P}ulmonary \textbf{AR}tery \textbf{SE}gmentation (PARSE) challenge. On the one hand, we focus on both the main PA and the branch PA segmentation. On the other hand, for better clinical application, we assign the same score weight to segmentation efficiency (mainly running time and GPU memory consumption during inference) while ensuring PA segmentation accuracy. We present a summary of the top algorithms and offer some suggestions for efficient and accurate multi-level PA automatic segmentation. We provide the PARSE challenge as open-access for the community to benchmark future algorithm developments at \url{https://parse2022.grand-challenge.org/Parse2022/}.

Xin Gao, Ruiyi Zhang, Meixi Du et al.

Despite the success of large language models (LLMs) on general-purpose tasks, their performance in highly specialized domains such as biomedicine remains unsatisfactory. A key limitation is the inability of LLMs to effectively leverage biomedical tools, which clinical experts and biomedical researchers rely on extensively in daily workflows. While recent general-domain tool-calling datasets have substantially improved the capabilities of LLM agents, existing efforts in the biomedical domain largely rely on in-context learning and restrict models to a small set of tools. To address this gap, we introduce BioTool, a comprehensive biomedical tool-calling dataset designed for fine-tuning LLMs. BioTool comprises 34 frequently used tools collected from the NCBI, Ensembl, and UniProt databases, along with 7,040 high-quality, human-verified query-API call pairs spanning variation, genomics, proteomics, evolution, and general biology. Fine-tuning a 4-billion-parameter LLM on BioTool yields substantial improvements in biomedical tool-calling performance, outperforming cutting-edge commercial LLMs such as GPT-5.1. Furthermore, human expert evaluations demonstrate that integrating a BioTool-fine-tuned tool caller significantly improves downstream answer quality compared to the same LLM without tool usage, highlighting the effectiveness of BioTool in enhancing the biomedical capabilities of LLMs. The full dataset and evaluation code are available at https://github.com/gxx27/BioTool

Xiuying Chen, Guodong Long, Chongyang Tao et al.

A robust summarization system should be able to capture the gist of the document, regardless of the specific word choices or noise in the input. In this work, we first explore the summarization models' robustness against perturbations including word-level synonym substitution and noise. To create semantic-consistent substitutes, we propose a SummAttacker, which is an efficient approach to generating adversarial samples based on language models. Experimental results show that state-of-the-art summarization models have a significant decrease in performance on adversarial and noisy test sets. Next, we analyze the vulnerability of the summarization systems and explore improving the robustness by data augmentation. Specifically, the first brittleness factor we found is the poor understanding of infrequent words in the input. Correspondingly, we feed the encoder with more diverse cases created by SummAttacker in the input space. The other factor is in the latent space, where the attacked inputs bring more variations to the hidden states. Hence, we construct adversarial decoder input and devise manifold softmixing operation in hidden space to introduce more diversity. Experimental results on Gigaword and CNN/DM datasets demonstrate that our approach achieves significant improvements over strong baselines and exhibits higher robustness on noisy, attacked, and clean datasets.

Xiuying Chen, Mingzhe Li, Shen Gao et al.

In a citation graph, adjacent paper nodes share related scientific terms and topics. The graph thus conveys unique structure information of document-level relatedness that can be utilized in the paper summarization task, for exploring beyond the intra-document information. In this work, we focus on leveraging citation graphs to improve scientific paper extractive summarization under different settings. We first propose a Multi-granularity Unsupervised Summarization model (MUS) as a simple and low-cost solution to the task. MUS finetunes a pre-trained encoder model on the citation graph by link prediction tasks. Then, the abstract sentences are extracted from the corresponding paper considering multi-granularity information. Preliminary results demonstrate that citation graph is helpful even in a simple unsupervised framework. Motivated by this, we next propose a Graph-based Supervised Summarization model (GSS) to achieve more accurate results on the task when large-scale labeled data are available. Apart from employing the link prediction as an auxiliary task, GSS introduces a gated sentence encoder and a graph information fusion module to take advantage of the graph information to polish the sentence representation. Experiments on a public benchmark dataset show that MUS and GSS bring substantial improvements over the prior state-of-the-art model.

Xinyu Zhang, Zhiwei Li, Zhenhong Zou et al. · tsinghua

Noise has always been nonnegligible trouble in object detection by creating confusion in model reasoning, thereby reducing the informativeness of the data. It can lead to inaccurate recognition due to the shift in the observed pattern, that requires a robust generalization of the models. To implement a general vision model, we need to develop deep learning models that can adaptively select valid information from multi-modal data. This is mainly based on two reasons. Multi-modal learning can break through the inherent defects of single-modal data, and adaptive information selection can reduce chaos in multi-modal data. To tackle this problem, we propose a universal uncertainty-aware multi-modal fusion model. It adopts a multi-pipeline loosely coupled architecture to combine the features and results from point clouds and images. To quantify the correlation in multi-modal information, we model the uncertainty, as the inverse of data information, in different modalities and embed it in the bounding box generation. In this way, our model reduces the randomness in fusion and generates reliable output. Moreover, we conducted a completed investigation on the KITTI 2D object detection dataset and its derived dirty data. Our fusion model is proven to resist severe noise interference like Gaussian, motion blur, and frost, with only slight degradation. The experiment results demonstrate the benefits of our adaptive fusion. Our analysis on the robustness of multi-modal fusion will provide further insights for future research.

Li Hu, Xin Gao, Peng Zhang et al.

Character Animation aims to generating character videos from still images through driving signals. Currently, diffusion models have become the mainstream in visual generation research, owing to their robust generative capabilities. However, challenges persist in the realm of image-to-video, especially in character animation, where temporally maintaining consistency with detailed information from character remains a formidable problem. In this paper, we leverage the power of diffusion models and propose a novel framework tailored for character animation. To preserve consistency of intricate appearance features from reference image, we design ReferenceNet to merge detail features via spatial attention. To ensure controllability and continuity, we introduce an efficient pose guider to direct character's movements and employ an effective temporal modeling approach to ensure smooth inter-frame transitions between video frames. By expanding the training data, our approach can animate arbitrary characters, yielding superior results in character animation compared to other image-to-video methods. Furthermore, we evaluate our method on benchmarks for fashion video and human dance synthesis, achieving state-of-the-art results.

Xiuying Chen, Mingzhe Li, Jiayi Zhang et al.

As it is cumbersome and expensive to acquire a huge amount of data for training neural dialog models, data augmentation is proposed to effectively utilize existing training samples. However, current data augmentation techniques on the dialog generation task mostly augment all cases in the training dataset without considering the intrinsic attributes between different cases. We argue that not all cases are beneficial for augmentation task, and the cases suitable for augmentation should obey the following two attributes: (1) low-quality (the dialog model cannot generate a high-quality response for the case), (2) representative (the case should represent the property of the whole dataset). Herein, we explore this idea by proposing a Selective Data Augmentation framework (SDA) for the response generation task. SDA employs a dual adversarial network to select the lowest quality and most representative data points for augmentation in one stage. Extensive experiments conducted on two publicly available datasets, i.e., DailyDialog and OpenSubtitles, show that our framework can improve the response generation performance with respect to various metrics.

Hongyan Bao, Yufei Han, Yujun Zhou et al.

Our work targets at searching feasible adversarial perturbation to attack a classifier with high-dimensional categorical inputs in a domain-agnostic setting. This is intrinsically an NP-hard knapsack problem where the exploration space becomes explosively larger as the feature dimension increases. Without the help of domain knowledge, solving this problem via heuristic method, such as Branch-and-Bound, suffers from exponential complexity, yet can bring arbitrarily bad attack results. We address the challenge via the lens of multi-armed bandit based combinatorial search. Our proposed method, namely FEAT, treats modifying each categorical feature as pulling an arm in multi-armed bandit programming. Our objective is to achieve highly efficient and effective attack using an Orthogonal Matching Pursuit (OMP)-enhanced Upper Confidence Bound (UCB) exploration strategy. Our theoretical analysis bounding the regret gap of FEAT guarantees its practical attack performance. In empirical analysis, we compare FEAT with other state-of-the-art domain-agnostic attack methods over various real-world categorical data sets of different applications. Substantial experimental observations confirm the expected efficiency and attack effectiveness of FEAT applied in different application scenarios. Our work further hints the applicability of FEAT for assessing the adversarial vulnerability of classification systems with high-dimensional categorical inputs.

Yuetan Chu, Xinhua Ma, Xinran Jin et al.

Medical vision-language pretraining increasingly relies on medical reports as large-scale supervisory signals; however, raw reports often exhibit substantial stylistic heterogeneity, variable length, and a considerable amount of image-irrelevant content. Although text normalization is frequently adopted as a preprocessing step in prior work, its design principles and empirical impact on vision-language pretraining remain insufficiently and systematically examined. In this study, we present MedTri, a deployable normalization framework for medical vision-language pretraining that converts free-text reports into a unified [Anatomical Entity: Radiologic Description + Diagnosis Category] triplet. This structured, anatomy-grounded normalization preserves essential morphological and spatial information while removing stylistic noise and image-irrelevant content, providing consistent and image-grounded textual supervision at scale. Across multiple datasets spanning both X-ray and computed tomography (CT) modalities, we demonstrate that structured, anatomy-grounded text normalization is an important factor in medical vision-language pretraining quality, yielding consistent improvements over raw reports and existing normalization baselines. In addition, we illustrate how this normalization can easily support modular text-level augmentation strategies, including knowledge enrichment and anatomy-grounded counterfactual supervision, which provide complementary gains in robustness and generalization without altering the core normalization process. Together, our results position structured text normalization as a critical and generalizable preprocessing component for medical vision-language learning, while MedTri provides this normalization platform. Code and data will be released at https://github.com/Arturia-Pendragon-Iris/MedTri.

Kaiwen Wan, Lei Li, Dengqiang Jia et al.

Medical images are generally acquired with limited field-of-view (FOV), which could lead to incomplete regions of interest (ROI), and thus impose a great challenge on medical image analysis. This is particularly evident for the learning-based multi-target landmark detection, where algorithms could be misleading to learn primarily the variation of background due to the varying FOV, failing the detection of targets. Based on learning a navigation policy, instead of predicting targets directly, reinforcement learning (RL)-based methods have the potential totackle this challenge in an efficient manner. Inspired by this, in this work we propose a multi-agent RL framework for simultaneous multi-target landmark detection. This framework is aimed to learn from incomplete or (and) complete images to form an implicit knowledge of global structure, which is consolidated during the training stage for the detection of targets from either complete or incomplete test images. To further explicitly exploit the global structural information from incomplete images, we propose to embed a shape model into the RL process. With this prior knowledge, the proposed RL model can not only localize dozens of targetssimultaneously, but also work effectively and robustly in the presence of incomplete images. We validated the applicability and efficacy of the proposed method on various multi-target detection tasks with incomplete images from practical clinics, using body dual-energy X-ray absorptiometry (DXA), cardiac MRI and head CT datasets. Results showed that our method could predict whole set of landmarks with incomplete training images up to 80% missing proportion (average distance error 2.29 cm on body DXA), and could detect unseen landmarks in regions with missing image information outside FOV of target images (average distance error 6.84 mm on 3D half-head CT).

Mengzhang Cai, Xin Gao, Yu Li et al.

The rapid evolution of Large Language Models (LLMs) is predicated on the quality and diversity of post-training datasets. However, a critical dichotomy persists: while models are rigorously benchmarked, the data fueling them remains a black box--characterized by opaque composition, uncertain provenance, and a lack of systematic evaluation. This opacity hinders reproducibility and obscures the causal link between data characteristics and model behaviors. To bridge this gap, we introduce OpenDataArena (ODA), a holistic and open platform designed to benchmark the intrinsic value of post-training data. ODA establishes a comprehensive ecosystem comprising four key pillars: (i) a unified training-evaluation pipeline that ensures fair, open comparisons across diverse models (e.g., Llama, Qwen) and domains; (ii) a multi-dimensional scoring framework that profiles data quality along tens of distinct axes; (iii) an interactive data lineage explorer to visualize dataset genealogy and dissect component sources; and (iv) a fully open-source toolkit for training, evaluation, and scoring to foster data research. Extensive experiments on ODA--covering over 120 training datasets across multiple domains on 22 benchmarks, validated by more than 600 training runs and 40 million processed data points--reveal non-trivial insights. Our analysis uncovers the inherent trade-offs between data complexity and task performance, identifies redundancy in popular benchmarks through lineage tracing, and maps the genealogical relationships across datasets. We release all results, tools, and configurations to democratize access to high-quality data evaluation. Rather than merely expanding a leaderboard, ODA envisions a shift from trial-and-error data curation to a principled science of Data-Centric AI, paving the way for rigorous studies on data mixing laws and the strategic composition of foundation models.

Yan Gong, Xinyu Zhang, Hao Liu et al.

Multi-modal fusion is increasingly being used for autonomous driving tasks, as different modalities provide unique information for feature extraction. However, the existing two-stream networks are only fused at a specific network layer, which requires a lot of manual attempts to set up. As the CNN goes deeper, the two modal features become more and more advanced and abstract, and the fusion occurs at the feature level with a large gap, which can easily hurt the performance. To reduce the loss of height and depth information during the process of projecting point clouds into 2D space, we utilize calibration parameters to project the point cloud into Altitude Difference Images (ADIs), which exhibit more distinct road features. In this study, we propose a novel fusion architecture called Skip-cross Networks (SkipcrossNets), which combine adaptively ADIs and camera images without being bound to a certain fusion epoch. Specifically, skip-cross fusion strategy connects each layer to each layer in a feed-forward manner, and for each layer, the feature maps of all previous layers are used as input and its own feature maps are used as input to all subsequent layers for the other modality, enhancing feature propagation and multi-modal features fusion. This strategy facilitates selection of the most similar feature layers from two modalities, enhancing feature reuse and providing complementary effects for sparse point cloud features. The advantages of skip-cross fusion strategy is demonstrated through application to the KITTI and A2D2 datasets, achieving a MaxF score of 96.85% on KITTI and an F1 score of 84.84% on A2D2. The model parameters require only 2.33 MB of memory at a speed of 68.24 FPS, which can be viable for mobile terminals and embedded devices.

Qianxin Qu, Yijin Xiong, Guipeng Zhang et al.

Cooperative LiDAR systems integrating vehicles and road infrastructure, termed V2I calibration, exhibit substantial potential, yet their deployment encounters numerous challenges. A pivotal aspect of ensuring data accuracy and consistency across such systems involves the calibration of LiDAR units across heterogeneous vehicular and infrastructural endpoints. This necessitates the development of calibration methods that are both real-time and robust, particularly those that can ensure robust performance in urban canyon scenarios without relying on initial positioning values. Accordingly, this paper introduces a novel approach to V2I calibration, leveraging spatial association information among perceived objects. Central to this method is the innovative Overall Intersection over Union (oIoU) metric, which quantifies the correlation between targets identified by vehicle and infrastructure systems, thereby facilitating the real-time monitoring of calibration results. Our approach involves identifying common targets within the perception results of vehicle and infrastructure LiDAR systems through the construction of an affinity matrix. These common targets then form the basis for the calculation and optimization of extrinsic parameters. Comparative and ablation studies conducted using the DAIR-V2X dataset substantiate the superiority of our approach. For further insights and resources, our project repository is accessible at https://github.com/MassimoQu/v2i-calib.

Helene Orsini, Hongyan Bao, Yujun Zhou et al.

Machine Learning-as-a-Service systems (MLaaS) have been largely developed for cybersecurity-critical applications, such as detecting network intrusions and fake news campaigns. Despite effectiveness, their robustness against adversarial attacks is one of the key trust concerns for MLaaS deployment. We are thus motivated to assess the adversarial robustness of the Machine Learning models residing at the core of these security-critical applications with categorical inputs. Previous research efforts on accessing model robustness against manipulation of categorical inputs are specific to use cases and heavily depend on domain knowledge, or require white-box access to the target ML model. Such limitations prevent the robustness assessment from being as a domain-agnostic service provided to various real-world applications. We propose a provably optimal yet computationally highly efficient adversarial robustness assessment protocol for a wide band of ML-driven cybersecurity-critical applications. We demonstrate the use of the domain-agnostic robustness assessment method with substantial experimental study on fake news detection and intrusion detection problems.

Juexiao Zhou, Xiaonan He, Liyuan Sun et al.

Skin and subcutaneous diseases rank high among the leading contributors to the global burden of nonfatal diseases, impacting a considerable portion of the population. Nonetheless, the field of dermatology diagnosis faces three significant hurdles. Firstly, there is a shortage of dermatologists accessible to diagnose patients, particularly in rural regions. Secondly, accurately interpreting skin disease images poses a considerable challenge. Lastly, generating patient-friendly diagnostic reports is usually a time-consuming and labor-intensive task for dermatologists. To tackle these challenges, we present SkinGPT-4, which is the world's first interactive dermatology diagnostic system powered by an advanced visual large language model. SkinGPT-4 leverages a fine-tuned version of MiniGPT-4, trained on an extensive collection of skin disease images (comprising 52,929 publicly available and proprietary images) along with clinical concepts and doctors' notes. We designed a two-step training process to allow SkinGPT to express medical features in skin disease images with natural language and make accurate diagnoses of the types of skin diseases. With SkinGPT-4, users could upload their own skin photos for diagnosis, and the system could autonomously evaluate the images, identifies the characteristics and categories of the skin conditions, performs in-depth analysis, and provides interactive treatment recommendations. Meanwhile, SkinGPT-4's local deployment capability and commitment to user privacy also render it an appealing choice for patients in search of a dependable and precise diagnosis of their skin ailments. To demonstrate the robustness of SkinGPT-4, we conducted quantitative evaluations on 150 real-life cases, which were independently reviewed by certified dermatologists, and showed that SkinGPT-4 could provide accurate diagnoses of skin diseases.

Zheng Liu, Honglin Lin, Chonghan Qin et al.

Chart reasoning is a critical capability for Vision Language Models (VLMs). However, the development of open-source models is severely hindered by the lack of high-quality training data. Existing datasets suffer from a dual challenge: synthetic charts are often simplistic and repetitive, while the associated QA pairs are prone to hallucinations and lack the reasoning depth required for complex tasks. To bridge this gap, we propose ChartVerse, a scalable framework designed to synthesize complex charts and reliable reasoning data from scratch. (1) To address the bottleneck of simple patterns, we first introduce Rollout Posterior Entropy (RPE), a novel metric that quantifies chart complexity. Guided by RPE, we develop complexity-aware chart coder to autonomously synthesize diverse, high-complexity charts via executable programs. (2) To guarantee reasoning rigor, we develop truth-anchored inverse QA synthesis. Diverging from standard generation, we adopt an answer-first paradigm: we extract deterministic answers directly from the source code, generate questions conditional on these anchors, and enforce strict consistency verification. To further elevate difficulty and reasoning depth, we filter samples based on model fail-rate and distill high-quality Chain-of-Thought (CoT) reasoning. We curate ChartVerse-SFT-600K and ChartVerse-RL-40K using Qwen3-VL-30B-A3B-Thinking as the teacher. Experimental results demonstrate that ChartVerse-8B achieves state-of-the-art performance, notably surpassing its teacher and rivaling the stronger Qwen3-VL-32B-Thinking.

Xiong Zhou, Xianming Liu, Deming Zhai et al.

One of the main challenges for feature representation in deep learning-based classification is the design of appropriate loss functions that exhibit strong discriminative power. The classical softmax loss does not explicitly encourage discriminative learning of features. A popular direction of research is to incorporate margins in well-established losses in order to enforce extra intra-class compactness and inter-class separability, which, however, were developed through heuristic means, as opposed to rigorous mathematical principles. In this work, we attempt to address this limitation by formulating the principled optimization objective as learning towards the largest margins. Specifically, we firstly define the class margin as the measure of inter-class separability, and the sample margin as the measure of intra-class compactness. Accordingly, to encourage discriminative representation of features, the loss function should promote the largest possible margins for both classes and samples. Furthermore, we derive a generalized margin softmax loss to draw general conclusions for the existing margin-based losses. Not only does this principled framework offer new perspectives to understand and interpret existing margin-based losses, but it also provides new insights that can guide the design of new tools, including sample margin regularization and largest margin softmax loss for the class-balanced case, and zero-centroid regularization for the class-imbalanced case. Experimental results demonstrate the effectiveness of our strategy on a variety of tasks, including visual classification, imbalanced classification, person re-identification, and face verification.

Zhihang Hu, Qinze Yu, Yucheng Guo et al.

Drug combination therapy is a well-established strategy for disease treatment with better effectiveness and less safety degradation. However, identifying novel drug combinations through wet-lab experiments is resource intensive due to the vast combinatorial search space. Recently, computational approaches, specifically deep learning models have emerged as an efficient way to discover synergistic combinations. While previous methods reported fair performance, their models usually do not take advantage of multi-modal data and they are unable to handle new drugs or cell lines. In this study, we collected data from various datasets covering various drug-related aspects. Then, we take advantage of large-scale pre-training models to generate informative representations and features for drugs, proteins, and diseases. Based on that, a message-passing graph is built on top to propagate information together with graph structure learning flexibility. This is first introduced in the biological networks and enables us to generate pseudo-relations in the graph. Our framework achieves state-of-the-art results in comparison with other deep learning-based methods on synergistic prediction benchmark datasets. We are also capable of inferencing new drug combination data in a test on an independent set released by AstraZeneca, where 10% of improvement over previous methods is observed. In addition, we're robust against unseen drugs and surpass almost 15% AU ROC compared to the second-best model. We believe our framework contributes to both the future wet-lab discovery of novel drugs and the building of promising guidance for precise combination medicine.

Xin Gao

In the field of medical image, deep convolutional neural networks(ConvNets) have achieved great success in the classification, segmentation, and registration tasks thanks to their unparalleled capacity to learn image features. However, these tasks often require large amounts of manually annotated data and are labor-intensive. Therefore, it is of significant importance for us to study unsupervised semantic feature learning tasks. In our work, we propose to learn features in medical images by training ConvNets to recognize the geometric transformation applied to images and present a simple self-supervised task that can easily predict the geometric transformation. We precisely define a set of geometric transformations in mathematical terms and generalize this model to 3D, taking into account the distinction between spatial and time dimensions. We evaluated our self-supervised method on CMR images of different modalities (bSSFP, T2, LGE) and achieved accuracies of 96.4%, 97.5%, and 96.4%, respectively. The code and models of our paper will be published on: https://github.com/gaoxin492/Geometric_Transformation_CMR

Ruochi Zhang, Haoran Wu, Yuting Xiu et al.

In recent years, the scientific community has become increasingly interested on peptides with non-canonical amino acids due to their superior stability and resistance to proteolytic degradation. These peptides present promising modifications to biological, pharmacological, and physiochemical attributes in both endogenous and engineered peptides. Notwithstanding their considerable advantages, the scientific community exhibits a conspicuous absence of an effective pre-trained model adept at distilling feature representations from such complex peptide sequences. We herein propose PepLand, a novel pre-training architecture for representation and property analysis of peptides spanning both canonical and non-canonical amino acids. In essence, PepLand leverages a comprehensive multi-view heterogeneous graph neural network tailored to unveil the subtle structural representations of peptides. Empirical validations underscore PepLand's effectiveness across an array of peptide property predictions, encompassing protein-protein interactions, permeability, solubility, and synthesizability. The rigorous evaluation confirms PepLand's unparalleled capability in capturing salient synthetic peptide features, thereby laying a robust foundation for transformative advances in peptide-centric research domains. We have made all the source code utilized in this study publicly accessible via GitHub at https://github.com/zhangruochi/pepland

Xiong Zhou, Xianming Liu, Deming Zhai et al.

The success of deep neural networks greatly relies on the availability of large amounts of high-quality annotated data, which however are difficult or expensive to obtain. The resulting labels may be class imbalanced, noisy or human biased. It is challenging to learn unbiased classification models from imperfectly annotated datasets, on which we usually suffer from overfitting or underfitting. In this work, we thoroughly investigate the popular softmax loss and margin-based loss, and offer a feasible approach to tighten the generalization error bound by maximizing the minimal sample margin. We further derive the optimality condition for this purpose, which indicates how the class prototypes should be anchored. Motivated by theoretical analysis, we propose a simple yet effective method, namely prototype-anchored learning (PAL), which can be easily incorporated into various learning-based classification schemes to handle imperfect annotation. We verify the effectiveness of PAL on class-imbalanced learning and noise-tolerant learning by extensive experiments on synthetic and real-world datasets.

Xin Gao, Xiaoyang Wang, Yun Zhu et al.

The construction of Supervised Fine-Tuning (SFT) datasets is a critical yet under-theorized stage in the post-training of Large Language Models (LLMs), as prevalent practices often rely on heuristic aggregation without a systematic understanding of how individual samples contribute to model performance. In this report, we propose a paradigm shift from ad-hoc curation to a closed-loop dataset engineering framework using OpenDataArena (ODA), which leverages value-anchored rankings and multi-dimensional analysis to transform value benchmarking into feedback signals guiding dataset construction. We instantiate this methodology through two new datasets: \textbf{ODA-Math-460k}, a specialized mathematics reasoning dataset that utilizes a novel two-stage difficulty-aware pipeline to achieve State-of-the-Art (SOTA) results on benchmarks such as AIME and HMMT, and \textbf{ODA-Mixture (100k \& 500k)}, a series of multi-domain instruction datasets built via an ``Anchor-and-Patch'' strategy that outperforms significantly larger open-source baselines. Our empirical results demonstrate that ODA-driven datasets significantly improve both domain-specific reasoning and general utility while achieving superior data efficiency, validating a transition toward data-centric AI where transparent evaluation serves as the primary engine for engineering high-quality training data.

Xiangchen Yin, Zhenda Yu, Xin Gao et al.

Low-light image enhancement restores the colors and details of a single image and improves high-level visual tasks. However, restoring the lost details in the dark area is still a challenge relying only on the RGB domain. In this paper, we delve into frequency as a new clue into the model and propose a DCT-driven enhancement transformer (DEFormer) framework. First, we propose a learnable frequency branch (LFB) for frequency enhancement contains DCT processing and curvature-based frequency enhancement (CFE) to represent frequency features. Additionally, we propose a cross domain fusion (CDF) to reduce the differences between the RGB domain and the frequency domain. Our DEFormer has achieved superior results on the LOL and MIT-Adobe FiveK datasets, improving the dark detection performance.

Juexiao Zhou, Bin Zhang, Xiuying Chen et al.

With the fast-growing and evolving omics data, the demand for streamlined and adaptable tools to handle the analysis continues to grow. In response to this need, we introduce Auto Bioinformatics Analysis (AutoBA), an autonomous AI agent based on a large language model designed explicitly for conventional omics data analysis. AutoBA simplifies the analytical process by requiring minimal user input while delivering detailed step-by-step plans for various bioinformatics tasks. Through rigorous validation by expert bioinformaticians, AutoBA's robustness and adaptability are affirmed across a diverse range of omics analysis cases, including whole genome sequencing (WGS), RNA sequencing (RNA-seq), single-cell RNA-seq, ChIP-seq, and spatial transcriptomics. AutoBA's unique capacity to self-design analysis processes based on input data variations further underscores its versatility. Compared with online bioinformatic services, AutoBA deploys the analysis locally, preserving data privacy. Moreover, different from the predefined pipeline, AutoBA has adaptability in sync with emerging bioinformatics tools. Overall, AutoBA represents a convenient tool, offering robustness and adaptability for complex omics data analysis.

Xiuying Chen, Tairan Wang, Taicheng Guo et al.

Question Answering (QA) effectively evaluates language models' reasoning and knowledge depth. While QA datasets are plentiful in areas like general domain and biomedicine, academic chemistry is less explored. Chemical QA plays a crucial role in both education and research by effectively translating complex chemical information into readily understandable format. Addressing this gap, we introduce ScholarChemQA, a large-scale QA dataset constructed from chemical papers. This dataset reflects typical real-world challenges, including an imbalanced data distribution and a substantial amount of unlabeled data that can be potentially useful. Correspondingly, we introduce a QAMatch model, specifically designed to effectively answer chemical questions by fully leveraging our collected data. We first address the issue of imbalanced label distribution by re-weighting the instance-wise loss based on the inverse frequency of each class, ensuring minority classes are not dominated by majority ones during optimization. Next, we utilize the unlabeled data to enrich the learning process, generating a variety of augmentations based on a SoftMix operation and ensuring their predictions align with the same target, i.e., pseudo-labels. To ensure the quality of the pseudo-labels, we propose a calibration procedure aimed at closely aligning the pseudo-label estimates of individual samples with a desired ground truth distribution. Experiments show that our QAMatch significantly outperforms the recent similar-scale baselines and Large Language Models (LLMs) not only on our ScholarChemQA dataset but also on four benchmark datasets. We hope our benchmark and model can facilitate and promote more research on chemical QA.

Donghao Zhou, Guisheng Liu, Hao Yang et al.

In this work, we study Human-Object Interaction Video Generation (HOIVG), which aims to synthesize high-quality human-object interaction videos conditioned on text, reference images, audio, and pose. This task holds significant practical value for automating content creation in real-world applications, such as e-commerce demonstrations, short video production, and interactive entertainment. However, existing approaches fail to accommodate all these requisite conditions. We present OmniShow, an end-to-end framework tailored for this practical yet challenging task, capable of harmonizing multimodal conditions and delivering industry-grade performance. To overcome the trade-off between controllability and quality, we introduce Unified Channel-wise Conditioning for efficient image and pose injection, and Gated Local-Context Attention to ensure precise audio-visual synchronization. To effectively address data scarcity, we develop a Decoupled-Then-Joint Training strategy that leverages a multi-stage training process with model merging to efficiently harness heterogeneous sub-task datasets. Furthermore, to fill the evaluation gap in this field, we establish HOIVG-Bench, a dedicated and comprehensive benchmark for HOIVG. Extensive experiments demonstrate that OmniShow achieves overall state-of-the-art performance across various multimodal conditioning settings, setting a solid standard for the emerging HOIVG task.

Zixuan Huang, Yunfeng Wang, Zhiwen Chen et al.

Skeleton extraction is a task focused on providing a simple representation of an object by extracting the skeleton from the given binary or RGB image. In recent years many attractive works in skeleton extraction have been made. But as far as we know, there is little research on how to utilize the context information in the binary shape of objects. In this paper, we propose an attention-based model called Context Attention Network (CANet), which integrates the context extraction module in a UNet architecture and can effectively improve the ability of network to extract the skeleton pixels. Meanwhile, we also use some novel techniques including distance transform, weight focal loss to achieve good results on the given dataset. Finally, without model ensemble and with only 80% of the training images, our method achieves 0.822 F1 score during the development phase and 0.8507 F1 score during the final phase of the Pixel SkelNetOn Competition, ranking 1st place on the leaderboard.

Jiyao Liu, Shangqi Gao, Yuxin Li et al.

Multi-modal Magnetic Resonance Imaging (MRI) translation leverages information from source MRI sequences to generate target modalities, enabling comprehensive diagnosis while overcoming the limitations of acquiring all sequences. While existing deep-learning-based multi-modal MRI translation methods have shown promising potential, they still face two key challenges: 1) lack of reliable uncertainty quantification for synthesized images, and 2) limited robustness when deployed across different medical centers. To address these challenges, we propose a novel framework that reformulates multi-modal MRI translation as a multi-modal evidential regression problem with distribution calibration. Our approach incorporates two key components: 1) an evidential regression module that estimates uncertainties from different source modalities and an explicit distribution mixture strategy for transparent multi-modal fusion, and 2) a distribution calibration mechanism that adapts to source-target mapping shifts to ensure consistent performance across different medical centers. Extensive experiments on three datasets from the BraTS2023 challenge demonstrate that our framework achieves superior performance and robustness across domains.

Yichen Liu, Donghao Zhou, Jie Wang et al.

Human-product images, which showcase the integration of humans and products, play a vital role in advertising, e-commerce, and digital marketing. The essential challenge of generating such images lies in ensuring the high-fidelity preservation of product details. Among existing paradigms, reference-based inpainting offers a targeted solution by leveraging product reference images to guide the inpainting process. However, limitations remain in three key aspects: the lack of diverse large-scale training data, the struggle of current models to focus on product detail preservation, and the inability of coarse supervision for achieving precise guidance. To address these issues, we propose HiFi-Inpaint, a novel high-fidelity reference-based inpainting framework tailored for generating human-product images. HiFi-Inpaint introduces Shared Enhancement Attention (SEA) to refine fine-grained product features and Detail-Aware Loss (DAL) to enforce precise pixel-level supervision using high-frequency maps. Additionally, we construct a new dataset, HP-Image-40K, with samples curated from self-synthesis data and processed with automatic filtering. Experimental results show that HiFi-Inpaint achieves state-of-the-art performance, delivering detail-preserving human-product images.

Abdullah Hamdi, Changchun Yang, Xin Gao

Early screening via colonoscopy is critical for colon cancer prevention, yet developing robust AI systems for this domain is hindered by the lack of densely annotated, long-sequence video datasets. Existing datasets predominantly focus on single-class polyp detection and lack the rich spatial, temporal, and linguistic annotations required to evaluate modern Multimodal Large Language Models (MLLMs). To address this critical gap, we introduce Colon-Bench, generated via a novel multi-stage agentic workflow. Our pipeline seamlessly integrates temporal proposals, bounding-box tracking, AI-driven visual confirmation, and human-in-the-loop review to scalably annotate full-procedure videos. The resulting verified benchmark is unprecedented in scope, encompassing 528 videos, 14 distinct lesion categories (including polyps, ulcers, and bleeding), over 300,000 bounding boxes, 213,000 segmentation masks, and 133,000 words of clinical descriptions. We utilize Colon-Bench to rigorously evaluate state-of-the-art MLLMs across lesion classification, Open-Vocabulary Video Object Segmentation (OV-VOS), and video Visual Question Answering (VQA). The MLLM results demonstrate surprisingly high localization performance in medical domains compared to SAM-3. Finally, we analyze common VQA errors from MLLMs to introduce a novel "colon-skill" prompting strategy, improving zero-shot MLLM performance by up to 9.7% across most MLLMs. The dataset and the code are available at https://abdullahamdi.com/colon-bench .

Yu Li, Xiaoran Shang, Qizhi Pei et al.

Post-training data plays a pivotal role in shaping the capabilities of Large Language Models (LLMs), yet datasets are often treated as isolated artifacts, overlooking the systemic connections that underlie their evolution. To disentangle these complex relationships, we introduce the concept of \textbf{data lineage} to the LLM ecosystem and propose an automated multi-agent framework to reconstruct the evolutionary graph of dataset development. Through large-scale lineage analysis, we characterize domain-specific structural patterns, such as vertical refinement in math-oriented datasets and horizontal aggregation in general-domain corpora. Moreover, we uncover pervasive systemic issues, including \textit{structural redundancy} induced by implicit dataset intersections and the \textit{propagation of benchmark contamination} along lineage paths. To demonstrate the practical value of lineage analysis for data construction, we leverage the reconstructed lineage graph to create a \textit{lineage-aware diversity-oriented dataset}. By anchoring instruction sampling at upstream root sources, this approach mitigates downstream homogenization and hidden redundancy, yielding a more diverse post-training corpus. We further highlight lineage-centric analysis as an efficient and robust topological alternative to sample-level dataset comparison for large-scale data ecosystems. By grounding data construction in explicit lineage structures, our work advances post-training data curation toward a more systematic and controllable paradigm.

Yuetan Chu, Yilan Zhang, Zhongyi Han et al.

Foundation models have recently attracted significant attention for their impressive generalizability across diverse downstream tasks. However, these models are demonstrated to exhibit great limitations in representing high-frequency components and fine-grained details. In many medical imaging tasks, the precise representation of such information is crucial due to the inherently intricate anatomical structures, sub-visual features, and complex boundaries involved. Consequently, the limited representation of prevalent foundation models can result in significant performance degradation or even failure in these tasks. To address these challenges, we propose a novel pretraining strategy, named Frequency-advanced Representation Autoencoder (Frepa). Through high-frequency masking and low-frequency perturbation combined with adversarial learning, Frepa encourages the encoder to effectively represent and preserve high-frequency components in the image embeddings. Additionally, we introduce an innovative histogram-equalized image masking strategy, extending the Masked Autoencoder approach beyond ViT to other architectures such as Swin Transformer and convolutional networks. We develop Frepa across nine medical modalities and validate it on 32 downstream tasks for both 2D images and 3D volume data. Without fine-tuning, Frepa can outperform other self-supervised pretraining methods and, in some cases, even surpasses task-specific trained models. This improvement is particularly significant for tasks involving fine-grained details, such as achieving up to a +15% increase in DSC for retina vessel segmentation and a +7% increase in IoU for lung nodule detection. Further experiments quantitatively reveal that Frepa enables superior high-frequency representations and preservation in the embeddings, underscoring its potential for developing more generalized and universal medical image foundation models.

Junpeng Ma, Sashuai Zhou, Guanghao Li et al.

Video Large Language Models (VLMs) have achieved remarkable success in video understanding, but the significant computational cost from processing dense frames severely limits their practical application. Existing methods alleviate this by selecting keyframes, but their greedy decision-making, combined with a decoupled evaluation of relevance and diversity, often falls into local optima and results in erroneously selecting irrelevant noise frames. To address these challenges, we propose GIFT: Global Irreplaceability Frame Targeting, a novel training-free framework that selects frames by assessing their intrinsic irreplaceability. Specifically, we first introduce Directed Diversity to quantify a frame's uniqueness conditioned on relevance, which allows us to formulate a unified irreplaceability score. Subsequently, our Budget-Aware Refinement strategy employs a adaptive iterative process that first secures a core set of frames with the highest irreplaceability, and then shifts its priority to building crucial temporal context around these selections as the budget expands. Extensive experiments demonstrate that GIFT achieves a maximum average improvement of 12.5% across long-form video benchmarks on LLaVA-Video-7B compared to uniform sampling.

Changyu Chen, Xiting Wang, Ting-En Lin et al.

In reasoning tasks, even a minor error can cascade into inaccurate results, leading to suboptimal performance of large language models in such domains. Earlier fine-tuning approaches sought to mitigate this by leveraging more precise supervisory signals from human labeling, larger models, or self-sampling, although at a high cost. Conversely, we develop a method that avoids external resources, relying instead on introducing perturbations to the input. Our training approach randomly masks certain tokens within the chain of thought, a technique we found to be particularly effective for reasoning tasks. When applied to fine-tuning with GSM8K on Llama-2-7B, this method achieved a 5\% improvement in GSM8K accuracy and a 10\% improvement in GSM-IC accuracy over standard supervised fine-tuning with a few codes modified. Furthermore, it is complementary to existing methods. When integrated with related explicit data augmentation methods, it leads to improvements across five datasets of various augmentation methods, as well as two different base models. We further investigate the mechanisms behind this improvement through case studies and quantitative analysis, suggesting that our approach may provide superior support for the model in capturing long-distance dependencies, especially those related to questions. This enhancement could deepen understanding of the premises in questions and prior steps. Our code is available at Github.

Xin Gao, Cem Sazara

Mental health significantly influences various aspects of our daily lives, and its importance has been increasingly recognized by the research community and the general public, particularly in the wake of the COVID-19 pandemic. This heightened interest is evident in the growing number of publications dedicated to mental health in the past decade. In this study, our goal is to identify general trends in the field and pinpoint high-impact research topics by analyzing a large dataset of mental health research papers. To accomplish this, we collected abstracts from various databases and trained a customized Sentence-BERT based embedding model leveraging the BERTopic framework. Our dataset comprises 96,676 research papers pertaining to mental health, enabling us to examine the relationships between different topics using their abstracts. To evaluate the effectiveness of the model, we compared it against two other state-of-the-art methods: Top2Vec model and LDA-BERT model. The model demonstrated superior performance in metrics that measure topic diversity and coherence. To enhance our analysis, we also generated word clouds to provide a comprehensive overview of the machine learning models applied in mental health research, shedding light on commonly utilized techniques and emerging trends. Furthermore, we provide a GitHub link* to the dataset used in this paper, ensuring its accessibility for further research endeavors.

Bintao He, Yiran Cheng, Hongjia Li et al.

Understanding protein flexibility and its dynamic interactions with other molecules is essential for studying protein function. Although cryogenic electron microscopy(cryo-EM) provides an opportunity to observe macromolecular dynamics directly, computational analysis of datasets mixing continuous and discrete structural states remains a formidable challenge. Here we introduce GaussianEM, a Gaussian-based pseudo-atomic framework that simultaneously resolves compositional and conformational heterogeneity from cryo-EM images. GaussianEM employs a dual-encoder-single-decoder architecture to decompose images into learnable Gaussian components, with variability encoded through modulated parameters. This explicit parameterization yields a continuous, intuitive representation of conformational dynamics that inherently preserves local structural integrity. By modeling displacements in Gaussian space, we capture atomic-scale conformational landscapes, bridging density maps and all-atom models. In comprehensive experiments, GaussianEM successfully reconstructs complex compositional and conformational variability,and resolves previously unobserved details in public datasets. Quantitative evaluations further confirm its ability to capture broader conformational diversity without sacrificing structural fidelity.

Wei Cui, Xin Gao, Juntao Wang

Generalized Complete Intersection Calabi-Yau Manifold (gCICY) is a new construction of Calabi-Yau manifolds established recently. However, the generation of new gCICYs using standard algebraic method is very laborious. Due to this complexity, the number of gCICYs and their classification still remain unknown. In this paper, we try to make some progress in this direction using neural network. The results showed that our trained models can have a high precision on the existing type $(1,1)$ and type $(2,1)$ gCICYs in the literature. Moreover, They can achieve a $97\%$ precision in predicting new gCICY which is generated differently from those used for training and testing. This shows that machine learning could be an effective method to classify and generate new gCICY.