Pablo M. Granitto

J. B. Cabral, B. Sánchez, F. Ramos et al.

Machine learning algorithms are highly useful for the classification of time series data in astronomy in this era of peta-scale public survey data releases. These methods can facilitate the discovery of new unknown events in most astrophysical areas, as well as improving the analysis of samples of known phenomena. Machine learning algorithms use features extracted from collected data as input predictive variables. A public tool called Feature Analysis for Time Series (FATS) has proved an excellent workhorse for feature extraction, particularly light curve classification for variable objects. In this study, we present a major improvement to FATS, which corrects inconvenient design choices, minor details, and documentation for the re-engineering process. This improvement comprises a new Python package called "feets", which is important for future code-refactoring for astronomical software tools.

Guillermo L. Grinblat, Lucas C. Uzal, Pablo M. Granitto

Generative Adversarial Networks (GANs) produce systematically better quality samples when class label information is provided., i.e. in the conditional GAN setup. This is still observed for the recently proposed Wasserstein GAN formulation which stabilized adversarial training and allows considering high capacity network architectures such as ResNet. In this work we show how to boost conditional GAN by augmenting available class labels. The new classes come from clustering in the representation space learned by the same GAN model. The proposed strategy is also feasible when no class information is available, i.e. in the unsupervised setup. Our generated samples reach state-of-the-art Inception scores for CIFAR-10 and STL-10 datasets in both supervised and unsupervised setup.

Juan B. Cabral, Bruno Sánchez, Martín Beroiz et al.

Data processing pipelines represent an important slice of the astronomical software library that include chains of processes that transform raw data into valuable information via data reduction and analysis. In this work we present Corral, a Python framework for astronomical pipeline generation. Corral features a Model-View-Controller design pattern on top of an SQL Relational Database capable of handling: custom data models; processing stages; and communication alerts, and also provides automatic quality and structural metrics based on unit testing. The Model-View-Controller provides concept separation between the user logic and the data models, delivering at the same time multi-processing and distributed computing capabilities. Corral represents an improvement over commonly found data processing pipelines in Astronomy since the design pattern eases the programmer from dealing with processing flow and parallelization issues, allowing them to focus on the specific algorithms needed for the successive data transformations and at the same time provides a broad measure of quality over the created pipeline. Corral and working examples of pipelines that use it are available to the community at https://github.com/toros-astro.

Guillermo Leale, Ariel Bayá, Diego Milone et al.

Characterizing genes with semantic information is an important process regarding the description of gene products. In spite that complete genomes of many organisms have been already sequenced, the biological functions of all of their genes are still unknown. Since experimentally studying the functions of those genes, one by one, would be unfeasible, new computational methods for gene functions inference are needed. We present here a novel computational approach for inferring biological function for a set of genes with previously unknown function, given a set of genes with well-known information. This approach is based on the premise that genes with similar behaviour should be grouped together. This is known as the guilt-by-association principle. Thus, it is possible to take advantage of clustering techniques to obtain groups of unknown genes that are co-clustered with genes that have well-known semantic information (GO annotations). Meaningful knowledge to infer unknown semantic information can therefore be provided by these well-known genes. We provide a method to explore the potential function of new genes according to those currently annotated. The results obtained indicate that the proposed approach could be a useful and effective tool when used by biologists to guide the inference of biological functions for recently discovered genes. Our work sets an important landmark in the field of identifying unknown gene functions through clustering, using an external source of biological input. A simple web interface to this proposal can be found at http://fich.unl.edu.ar/sinc/webdemo/gamma-am/.