Keisuke Goda

Denny Wu, Hirofumi Kobayashi, Charles Ding et al.

A crucial challenge in image-based modeling of biomedical data is to identify trends and features that separate normality and pathology. In many cases, the morphology of the imaged object exhibits continuous change as it deviates from normality, and thus a generative model can be trained to model this morphological continuum. Moreover, given side information that correlates to certain trend in morphological change, a latent variable model can be regularized such that its latent representation reflects this side information. In this work, we use the Wasserstein Auto-encoder to model this pathology continuum, and apply the Hilbert-Schmitt Independence Criterion (HSIC) to enforce dependency between certain latent features and the provided side information. We experimentally show that the model can provide disentangled and interpretable latent representations and also generate a continuum of morphological changes that corresponds to change in the side information.

Ezra Webb, Cheng Lei, Chun-Jung Huang et al.

In this paper, we present contemporary techniques for visualising the feature space of a deep learning image classification neural network. These techniques are viewed in the context of a feed-forward network trained to classify low resolution fluorescence images of white blood cells captured using optofluidic imaging. The model has two output classes corresponding to two different cell types, which are often difficult to distinguish by eye. This paper has two major sections. The first looks to develop the information space presented by dimension reduction techniques, such as t-SNE, used to embed high-dimensional pre-softmax layer activations into a two-dimensional plane. The second section looks at feature visualisation by optimisation to generate feature images representing the learned features of the network. Using and developing these techniques we visualise class separation and structures within the dataset at various depths using clustering algorithms and feature images; track the development of feature complexity as we ascend the network; and begin to extract the features the network has learnt by modulating single-channel feature images with up-scaled neuron activation maps to distinguish their most salient parts.