Jiangjie Qiu

Jiangjie Qiu, Yijun Li, Wentao Li et al.

Property-conditional molecular generation should produce valid, diverse molecules while responding to continuous target values at low sampling cost. We introduce DriftingMol, a two-stage framework that adapts drifting models to a SELFIES latent molecular space. A frozen SELFIES beta-VAE provides the latent space, and the hidden representation of its decoder serves as the drift feature map. In decoder-coupled drift, decoder weights remain fixed, but drift gradients are backpropagated through the decoder feature map to a DiT generator, inducing a pullback metric aligned with molecular decoding. On ZINC250K, the default setting achieves QED Spearman correlation 0.493 with 94.7% uniqueness, while the strongest decoder-coupled condition reaches 0.510. Under protocol-matched four-property conditioning, decoder-coupled drift reaches mean Spearman correlation up to 0.598. Across 15 controlled variants, models that preserve the gradient path through decoder features achieve higher correlations than the tested latent-space, random-feature, and external-feature drift variants, while detached or stop-gradient decoder controls yield near-zero QED correlation and very low uniqueness. These results indicate that decoder-coupled drift is a useful low-cost mechanism for property-biased molecular generation, requiring one generator evaluation and one frozen decoder pass.

Yaotian Yang, Yiwen Tang, Yizhe Chen et al.

Machine learning-based interatomic potentials and force fields depend critically on accurate atomic structures, yet such data are scarce due to the limited availability of experimentally resolved crystals. Although atomic-resolution electron microscopy offers a potential source of structural data, converting these images into simulation-ready formats remains labor-intensive and error-prone, creating a bottleneck for model training and validation. We introduce AutoMat, an end-to-end, agent-assisted pipeline that automatically transforms scanning transmission electron microscopy (STEM) images into atomic crystal structures and predicts their physical properties. AutoMat combines pattern-adaptive denoising, physics-guided template retrieval, symmetry-aware atomic reconstruction, fast relaxation and property prediction via MatterSim, and coordinated orchestration across all stages. We propose the first dedicated STEM2Mat-Bench for this task and evaluate performance using lattice RMSD, formation energy MAE, and structure-matching success rate. By orchestrating external tool calls, AutoMat enables a text-only LLM to outperform vision-language models in this domain, achieving closed-loop reasoning throughout the pipeline. In large-scale experiments over 450 structure samples, AutoMat substantially outperforms existing multimodal large language models and tools. These results validate both AutoMat and STEM2Mat-Bench, marking a key step toward bridging microscopy and atomistic simulation in materials science.The code and dataset are publicly available at https://github.com/yyt-2378/AutoMat and https://huggingface.co/datasets/yaotianvector/STEM2Mat.

Jiangjie Qiu, Hou Hei Lam, Xiuyuan Hu et al. · tsinghua

Organic photovoltaic (OPV) materials offer a promising avenue toward cost-effective solar energy utilization. However, optimizing donor-acceptor (D-A) combinations to achieve high power conversion efficiency (PCE) remains a significant challenge. In this work, we propose a framework that integrates large-scale pretraining of graph neural networks (GNNs) with a GPT-2 (Generative Pretrained Transformer 2)-based reinforcement learning (RL) strategy to design OPV molecules with potentially high PCE. This approach produces candidate molecules with predicted efficiencies approaching 21\%, although further experimental validation is required. Moreover, we conducted a preliminary fragment-level analysis to identify structural motifs recognized by the RL model that may contribute to enhanced PCE, thus providing design guidelines for the broader research community. To facilitate continued discovery, we are building the largest open-source OPV dataset to date, expected to include nearly 3,000 donor-acceptor pairs. Finally, we discuss plans to collaborate with experimental teams on synthesizing and characterizing AI-designed molecules, which will provide new data to refine and improve our predictive and generative models.

Jiangjie Qiu, Wentao Li, Honghao Chen et al.

Identifying low-energy adsorption geometries on catalytic surfaces is a practical bottleneck for computational heterogeneous catalysis: the difficulty lies not only in the cost of density functional theory (DFT) but in proposing initial placements that relax into the correct energy basins. Conditional denoising diffusion has improved success rates, yet requires $\sim$100 iterative steps per sample. Here we introduce AdsorbFlow, a deterministic generative model that learns an energy-conditioned vector field on the rigid-body configuration space of adsorbate translation and rotation via conditional flow matching. Energy information enters through classifier-free guidance conditioning -- not energy-gradient guidance -- and sampling reduces to integrating an ODE in as few as 5 steps. On OC20-Dense with full DFT single-point verification, AdsorbFlow with an EquiformerV2 backbone achieves 61.4% SR@10 and 34.1% SR@1 -- surpassing AdsorbDiff (31.8% SR@1, 41.0% SR@10) at every evaluation level and AdsorbML (47.7% SR@10) -- while using 20 times fewer generative steps and achieving the lowest anomaly rate among generative methods (6.8%). On 50 out-of-distribution systems, AdsorbFlow retains 58.0% SR@10 with a MLFF-to-DFT gap of only 4~percentage points. These results establish that deterministic transport is both faster and more accurate than stochastic denoising for adsorbate placement.

Honghao Chen, Jiangjie Qiu, Yi Shen Tew et al.

Density functional theory (DFT) is widely used to connect atomic structure with catalytic behavior, but computational heterogeneous catalysis studies often require long workflows that are costly, iterative, and sensitive to setup choices. Besides the intrinsic cost and accuracy limits of first-principles calculations, practical workflow issues such as keeping references consistent, preparing many related inputs, recovering from failed runs on computing clusters, and maintaining a complete record of what was done, can slow down projects and make results difficult to reproduce or extend. Here we present CatMaster, a large-language-model (LLM)-driven agent system that turns natural language requests into complete calculation workspaces, including structures, inputs, outputs, logs, and a concise run record. CatMaster maintains a persistent project record of key facts, constraints, and file pointers to support inspection and restartability. It is paired with a multi-fidelity tool library that covers rapid surrogate relaxations and high-fidelity DFT calculations for validation when needed. We demonstrate CatMaster on four demonstrations of increasing complexity: an O2 spin-state check with remote execution, BCC Fe surface energies with a protocol-sensitivity study and CO adsorption site ranking, high-throughput Pt--Ni--Cu alloy screening for hydrogen evolution reaction (HER) descriptors with surrogate-to-DFT validation, and a demonstration beyond the predefined tool set, including equation-of-state fitting for BCC Fe and CO-FeN4-graphene single-atom catalyst geometry preparation. By reducing manual scripting and bookkeeping while keeping the full evidence trail, CatMaster aims to help catalysis researchers focus on modeling choices and chemical interpretation rather than workflow management.

Hou Hei Lam, Jiangjie Qiu, Xiuyuan Hu et al.

Organic photovoltaic (OPV) materials offer a promising path toward sustainable energy generation, but their development is limited by the difficulty of identifying high performance donor and acceptor pairs with strong power conversion efficiencies (PCEs). Existing design strategies typically focus on either the donor or the acceptor alone, rather than using a unified approach capable of modeling both components. In this work, we introduce a dual machine learning framework for OPV discovery that combines predictive modeling with generative molecular design. We present the Organic Photovoltaic Donor Acceptor Dataset (OPV2D), the largest curated dataset of its kind, containing 2000 experimentally characterized donor acceptor pairs. Using this dataset, we develop the Organic Photovoltaic Classifier (OPVC) to predict whether a material exhibits OPV behavior, and a hierarchical graph neural network that incorporates multi task learning and donor acceptor interaction modeling. This framework includes the Molecular Orbital Energy Estimator (MOE2) for predicting HOMO and LUMO energy levels, and the Photovoltaic Performance Predictor (P3) for estimating PCE. In addition, we introduce the Material Generative Pretrained Transformer (MatGPT) to produce synthetically accessible organic semiconductors, guided by a reinforcement learning strategy with three objective policy optimization. By linking molecular representation learning with performance prediction, our framework advances data driven discovery of high performance OPV materials.

Wentao Li, Yizhe Chen, Jiangjie Qiu et al.

Data scarcity and the high cost of annotation have long been persistent challenges in the field of materials science. Inspired by its potential in other fields like computer vision, we propose the MatWheel framework, which train the material property prediction model using the synthetic data generated by the conditional generative model. We explore two scenarios: fully-supervised and semi-supervised learning. Using CGCNN for property prediction and Con-CDVAE as the conditional generative model, experiments on two data-scarce material property datasets from Matminer database are conducted. Results show that synthetic data has potential in extreme data-scarce scenarios, achieving performance close to or exceeding that of real samples in all two tasks. We also find that pseudo-labels have little impact on generated data quality. Future work will integrate advanced models and optimize generation conditions to boost the effectiveness of the materials data flywheel.