Yuanye Zhou

Feiyang Xiao, Yichi Zhang, Xigui Li et al.

The precise segmentation of intracranial aneurysms and their parent vessels (IA-Vessel) is a critical step for hemodynamic analyses, which mainly depends on computational fluid dynamics (CFD). However, current segmentation methods predominantly focus on image-based evaluation metrics, often neglecting their practical effectiveness in subsequent CFD applications. To address this deficiency, we present the Intracranial Aneurysm Vessel Segmentation (IAVS) dataset, the first comprehensive, multi-center collection comprising 641 3D MRA images with 587 annotations of aneurysms and IA-Vessels. In addition to image-mask pairs, IAVS dataset includes detailed hemodynamic analysis outcomes, addressing the limitations of existing datasets that neglect topological integrity and CFD applicability. To facilitate the development and evaluation of clinically relevant techniques, we construct two evaluation benchmarks including global localization of aneurysms (Stage I) and fine-grained segmentation of IA-Vessel (Stage II) and develop a simple and effective two-stage framework, which can be used as a out-of-the-box method and strong baseline. For comprehensive evaluation of applicability of segmentation results, we establish a standardized CFD applicability evaluation system that enables the automated and consistent conversion of segmentation masks into CFD models, offering an applicability-focused assessment of segmentation outcomes. The dataset, code, and model will be public available at https://github.com/AbsoluteResonance/IAVS.

Xigui Li, Yuanye Zhou, Feiyang Xiao et al.

Intracranial aneurysm (IA) is a common cerebrovascular disease that is usually asymptomatic but may cause severe subarachnoid hemorrhage (SAH) if ruptured. Although clinical practice is usually based on individual factors and morphological features of the aneurysm, its pathophysiology and hemodynamic mechanisms remain controversial. To address the limitations of current research, this study constructed a comprehensive hemodynamic dataset of intracranial aneurysms. The dataset is based on 466 real aneurysm models, and 10,000 synthetic models were generated by resection and deformation operations, including 466 aneurysm-free models and 9,534 deformed aneurysm models. The dataset also provides medical image-like segmentation mask files to support insightful analysis. In addition, the dataset contains hemodynamic data measured at eight steady-state flow rates (0.001 to 0.004 kg/s), including critical parameters such as flow velocity, pressure, and wall shear stress, providing a valuable resource for investigating aneurysm pathogenesis and clinical prediction. This dataset will help advance the understanding of the pathologic features and hemodynamic mechanisms of intracranial aneurysms and support in-depth research in related fields. Dataset hosted at https://github.com/Xigui-Li/Aneumo.

Xigui Li, Yuanye Zhou, Feiyang Xiao et al.

Intracranial aneurysms (IAs) are serious cerebrovascular lesions found in approximately 5\% of the general population. Their rupture may lead to high mortality. Current methods for assessing IA risk focus on morphological and patient-specific factors, but the hemodynamic influences on IA development and rupture remain unclear. While accurate for hemodynamic studies, conventional computational fluid dynamics (CFD) methods are computationally intensive, hindering their deployment in large-scale or real-time clinical applications. To address this challenge, we curated a large-scale, high-fidelity aneurysm CFD dataset to facilitate the development of efficient machine learning algorithms for such applications. Based on 427 real aneurysm geometries, we synthesized 10,660 3D shapes via controlled deformation to simulate aneurysm evolution. The authenticity of these synthetic shapes was confirmed by neurosurgeons. CFD computations were performed on each shape under eight steady-state mass flow conditions, generating a total of 85,280 blood flow dynamics data covering key parameters. Furthermore, the dataset includes segmentation masks, which can support tasks that use images, point clouds or other multimodal data as input. Additionally, we introduced a benchmark for estimating flow parameters to assess current modeling methods. This dataset aims to advance aneurysm research and promote data-driven approaches in biofluids, biomedical engineering, and clinical risk assessment. The code and dataset are available at: https://github.com/Xigui-Li/Aneumo.

Yuanye Zhou, Zhaokun Wang, Kai Zhou et al.

Physics-informed neural networks (PINNs) have emerged as a powerful meshless tool for topology optimization, capable of simultaneously determining optimal topologies and physical solutions. However, conventional PINNs rely on density-based topology descriptions, which necessitate manual interpolation and limit their applicability to complex geometries. To address this, we propose Lagrangian topology-conscious PINNs (LT-PINNs), a novel framework for boundary-focused engineering optimization. By parameterizing the control variables of topology boundary curves as learnable parameters, LT-PINNs eliminate the need for manual interpolation and enable precise boundary determination. We further introduce specialized boundary condition loss function and topology loss function to ensure sharp and accurate boundary representations, even for intricate topologies. The accuracy and robustness of LT-PINNs are validated via two types of partial differential equations (PDEs), including elastic equation with Dirichlet boundary conditions and Laplace's equation with Neumann boundary conditions. Furthermore, we demonstrate effectiveness of LT-PINNs on more complex time-dependent and time-independent flow problems without relying on measurement data, and showcase their engineering application potential in flow velocity rearrangement, transforming a uniform upstream velocity into a sine-shaped downstream profile. The results demonstrate (1) LT-PINNs achieve substantial reductions in relative L2 errors compared with the state-of-art density topology-oriented PINNs (DT-PINNs), (2) LT-PINNs can handle arbitrary boundary conditions, making them suitable for a wide range of PDEs, and (3) LT-PINNs can infer clear topology boundaries without manual interpolation, especially for complex topologies.