Danne C. Elbers

Aruna Mohan, Danne Elbers, Or Zilbershot et al.

Remote patient monitoring based on wearable single-lead electrocardiogram (ECG) devices has significant potential for enabling the early detection of heart disease, especially in combination with artificial intelligence (AI) approaches for automated heart disease detection. There have been prior studies applying AI approaches based on deep learning for heart disease detection. However, these models are yet to be widely accepted as a reliable aid for clinical diagnostics, in part due to the current black-box perception surrounding many AI algorithms. In particular, there is a need to identify the key features of the ECG signal that contribute toward making an accurate diagnosis, thereby enhancing the interpretability of the model. In the present study, we develop a vision transformer approach to identify atrial fibrillation based on single-lead ECG data. A residual network (ResNet) approach is also developed for comparison with the vision transformer approach. These models are applied to the Chapman-Shaoxing dataset to classify atrial fibrillation, as well as another common arrhythmia, sinus bradycardia, and normal sinus rhythm heartbeats. The models enable the identification of the key regions of the heartbeat that determine the resulting classification, and highlight the importance of P-waves and T-waves, as well as heartbeat duration and signal amplitude, in distinguishing normal sinus rhythm from atrial fibrillation and sinus bradycardia.

Joshua R. Minot, Nicholas Cheney, Marc Maier et al.

Medical systems in general, and patient treatment decisions and outcomes in particular, are affected by bias based on gender and other demographic elements. As language models are increasingly applied to medicine, there is a growing interest in building algorithmic fairness into processes impacting patient care. Much of the work addressing this question has focused on biases encoded in language models -- statistical estimates of the relationships between concepts derived from distant reading of corpora. Building on this work, we investigate how word choices made by healthcare practitioners and language models interact with regards to bias. We identify and remove gendered language from two clinical-note datasets and describe a new debiasing procedure using BERT-based gender classifiers. We show minimal degradation in health condition classification tasks for low- to medium-levels of bias removal via data augmentation. Finally, we compare the bias semantically encoded in the language models with the bias empirically observed in health records. This work outlines an interpretable approach for using data augmentation to identify and reduce the potential for bias in natural language processing pipelines.

Frank Meng, Craig A. Morioka, Danne C. Elbers

Sequence alignments are used to capture patterns composed of elements representing multiple conceptual levels through the alignment of sequences that contain overlapping and variable length annotations. The alignments also determine the proper context window of words and phrases that most directly impact the meaning of a given target within a sentence, eliminating the need to predefine a fixed context window of words surrounding the targets. We evaluated the system using the CoNLL-2003 named entity recognition (NER) task.