Tom Berg

Jiahao Shao, Anam Nawaz Khan, Christopher Brett et al.

Pathology reports serve as the definitive record for breast cancer staging, yet their unstructured format impedes large-scale data curation. While Large Language Models (LLMs) offer semantic reasoning, their deployment is often limited by high computational costs and hallucination risks. This study introduces a parameter-efficient, multi-task framework for automating the extraction of Tumor-Node-Metastasis (TNM) staging, histologic grade, and biomarkers. We fine-tune a Llama-3-8B-Instruct encoder using Low-Rank Adaptation (LoRA) on a curated, expert-verified dataset of 10,677 reports. Unlike generative approaches, our architecture utilizes parallel classification heads to enforce consistent schema adherence. Experimental results demonstrate that the model achieves a Macro F1 score of 0.976, successfully resolving complex contextual ambiguities and heterogeneous reporting formats that challenge traditional extraction methods including rule-based natural language processing (NLP) pipelines, zero-shot LLMs, and single-task LLM baselines. The proposed adapter-efficient, multi-task architecture enables reliable, scalable pathology-derived cancer staging and biomarker profiling, with the potential to enhance clinical decision support and accelerate data-driven oncology research.

Ata Akbari Asanjan, Olivia Alexander, Tom Berg et al.

We introduce GAIA (Geospatial Artificial Intelligence for Atmospheres), a hybrid self-supervised geospatial foundation model that fuses Masked Autoencoders (MAE) with self-distillation with no labels (DINO) to generate semantically rich representations from global geostationary satellite imagery. Pre-trained on 15 years of globally-merged infrared observations (2001-2015), GAIA learns disentangled representations that capture atmospheric dynamics rather than trivial diurnal patterns, as evidenced by distributed principal component structure and temporal coherence analysis. We demonstrate robust reconstruction capabilities across varying data availability (30-95% masking), achieving superior gap-filling performance on real missing data patterns. When transferred to downstream tasks, GAIA consistently outperforms an MAE-only baseline: improving atmospheric river segmentation (F1: 0.58 vs 0.52), enhancing tropical cyclone detection (storm-level recall: 81% vs 75%, early detection: 29% vs 17%), and maintaining competitive precipitation estimation performance. Analysis reveals that GAIA's hybrid objectives encourage learning of spatially coherent, object-centric features distributed across multiple principal components rather than concentrated representations focused on reconstruction. This work demonstrates that combining complementary self-supervised objectives yields more transferable representations for diverse atmospheric modeling tasks. Model weights and code are available at: https://huggingface.co/bcg-usra-nasa-gaia/GAIA-v1.