Yucheng Xing

Pei Liu, Xiangxiang Zeng, Tengfei Ma et al.

Whole-Slide Images (WSIs) are widely used for estimating the prognosis of cancer patients. Current studies generally follow a cancer-specific learning paradigm. However, the available training samples for one cancer type are usually scarce in pathology. Consequently, the model often struggles to learn generalizable knowledge, thus performing worse on the tumor samples with inherent high heterogeneity. Although multi-cancer joint learning and knowledge transfer approaches have been explored recently to address it, they either rely on large-scale joint training or extensive inference across multiple models, posing new challenges in computational efficiency. To this end, this paper proposes a new scheme, Sparse Task Vector Mixup with Hypernetworks (STEPH). Unlike previous ones, it efficiently absorbs generalizable knowledge from other cancers for the target via model merging: i) applying task vector mixup to each source-target pair and then ii) sparsely aggregating task vector mixtures to obtain an improved target model, driven by hypernetworks. Extensive experiments on 13 cancer datasets show that STEPH improves over cancer-specific learning and an existing knowledge transfer baseline by 5.14% and 2.01%, respectively. Moreover, it is a more efficient solution for learning prognostic knowledge from other cancers, without requiring large-scale joint training or extensive multi-model inference. Code is publicly available at https://github.com/liupei101/STEPH.

Ling Huang, Su Ruan, Yucheng Xing et al.

The comprehensive integration of machine learning healthcare models within clinical practice remains suboptimal, notwithstanding the proliferation of high-performing solutions reported in the literature. A predominant factor hindering widespread adoption pertains to an insufficiency of evidence affirming the reliability of the aforementioned models. Recently, uncertainty quantification methods have been proposed as a potential solution to quantify the reliability of machine learning models and thus increase the interpretability and acceptability of the result. In this review, we offer a comprehensive overview of prevailing methods proposed to quantify uncertainty inherent in machine learning models developed for various medical image tasks. Contrary to earlier reviews that exclusively focused on probabilistic methods, this review also explores non-probabilistic approaches, thereby furnishing a more holistic survey of research pertaining to uncertainty quantification for machine learning models. Analysis of medical images with the summary and discussion on medical applications and the corresponding uncertainty evaluation protocols are presented, which focus on the specific challenges of uncertainty in medical image analysis. We also highlight some potential future research work at the end. Generally, this review aims to allow researchers from both clinical and technical backgrounds to gain a quick and yet in-depth understanding of the research in uncertainty quantification for medical image analysis machine learning models.

Jingying Ma, Feng Wu, Yucheng Xing et al.

Electroencephalography (EEG) foundation models (EFMs) have achieved strong performance under full fine-tuning but exhibit poor generalization when subject-level supervision is limited, a common constraint in real-world clinical settings. We show that this failure stems not merely from limited supervision, but from a structural mismatch between noisy, limited supervision and the highly plastic parameter space of EFMs. To address this challenge, we propose SCOPE, a Structured COnfidence-aware Prototype-guided adaptation framework for EFM fine-tuning. SCOPE follows a two-stage pipeline. In the first stage, we construct reliable external supervision by learning geometry-regularized task priors, constructing balanced class-level prototypes over the resulting embeddings, and producing confidence-aware pseudo-labels from their agreement to filter unreliable signals on unlabeled data. In the second stage, we introduce ProAdapter, which adapts frozen EEG foundation models via a lightweight adapter conditioned on the structured prototypes. Experiments across three EEG tasks and five foundation model backbones demonstrate that SCOPE consistently achieves strong performance and efficiency under label-limited cross-subject settings.

Yucheng Xing, Pei Liu, Jingying Ma et al.

Multiple instance learning (MIL) is the dominant framework for whole-slide image analysis in computational pathology, typically combining a frozen patch encoder, a projection layer, and a slide-level aggregator. While encoders and aggregators have been extensively studied, the projection layer remains a largely morphology-only bottleneck. This limits endpoints such as biomarker status and survival, which are governed by a molecular state that is not fully captured by H&E morphology. We introduce Molecularly Informed Staining Transform (MIST), a plug-in replacement for the MIL projection layer that uses paired spatial transcriptomics only during training to construct virtual molecular stains. MIST clusters gene expression profiles into cross-modal prototypes, anchors them in the frozen foundation model feature space, and uses them to reorganize H&E patch features along molecularly guided axes. It requires no transcriptomics at inference and can be inserted before standard MIL aggregators. We evaluate MIST across 23 downstream tasks and 8 MIL aggregators. MIST improves 240 of 256 configurations over the standard projection layer, with an average gain of +3.5%, observed consistently across endpoint types: +5.2% on survival prediction, +3.3% on tissue subtyping, and +2.6% on biomarker prediction. Ablations confirm that gene-derived prototypes are the primary source of the gains, while spatial, biological, and pathological analyses show that cross-modal prototype affinities capture spatially coherent molecular programs from H&E alone.

Yucheng Xing, Xin Wang

Rain streaks manifest as directional and frequency-concentrated structures that overlap across multiple scales, making single-image rain removal particularly challenging. While diffusion-based restoration models provide a powerful framework for progressive denoising, standard spatial-domain diffusion does not explicitly account for such structured spectral characteristics. We introduce SpectralDiff, a spectral-structured diffusion-based framework tailored for single-image rain removal. Rather than redefining the diffusion formulation, our method incorporates structured spectral perturbations to guide the progressive suppression of multi-directional rain components. To support this design, we further propose a full-product U-Net architecture that leverages the convolution theorem to replace convolution operations with element-wise product layers, improving computational efficiency while preserving modeling capacity. Extensive experiments on synthetic and real-world benchmarks demonstrate that SpectralDiff achieves competitive rain removal performance with improved model compactness and favorable inference efficiency compared to existing diffusion-based approaches.

Ling Huang, Yucheng Xing, Qika Lin et al.

Multimodal survival analysis aims to combine heterogeneous data sources (e.g., clinical, imaging, text, genomics) to improve the prediction quality of survival outcomes. However, this task is particularly challenging due to high heterogeneity and noise across data sources, which vary in structure, distribution, and context. Additionally, the ground truth is often censored (uncertain) due to incomplete follow-up data. In this paper, we propose a novel evidential multimodal survival fusion model, EsurvFusion, designed to combine multimodal data at the decision level through an evidence-based decision fusion layer that jointly addresses both data and model uncertainty while incorporating modality-level reliability. Specifically, EsurvFusion first models unimodal data with newly introduced Gaussian random fuzzy numbers, producing unimodal survival predictions along with corresponding aleatoric and epistemic uncertainties. It then estimates modality-level reliability through a reliability discounting layer to correct the misleading impact of noisy data modalities. Finally, a multimodal evidence-based fusion layer is introduced to combine the discounted predictions to form a unified, interpretable multimodal survival analysis model, revealing each modality's influence based on the learned reliability coefficients. This is the first work that studies multimodal survival analysis with both uncertainty and reliability. Extensive experiments on four multimodal survival datasets demonstrate the effectiveness of our model in handling high heterogeneity data, establishing new state-of-the-art on several benchmarks.

Ling Huang, Yucheng Xing, Swapnil Mishra et al.

Time-to-event analysis provides insights into clinical prognosis and treatment recommendations. However, this task is more challenging than standard regression problems due to the presence of censored observations. Additionally, the lack of confidence assessment, model robustness, and prediction calibration raises concerns about the reliability of predictions. To address these challenges, we propose an evidential regression model specifically designed for time-to-event prediction. The proposed model quantifies both epistemic and aleatory uncertainties using Gaussian Random Fuzzy Numbers and belief functions, providing clinicians with uncertainty-aware survival time predictions. The model is trained by minimizing a generalized negative log-likelihood function accounting for data censoring. Experimental evaluations using simulated datasets with different data distributions and censoring conditions, as well as real-world datasets across diverse clinical applications, demonstrate that our model delivers both accurate and reliable performance, outperforming state-of-the-art methods. These results highlight the potential of our approach for enhancing clinical decision-making in survival analysis.

Xiaodong Liu, Yucheng Xing, Xin Wang

Reliable motion forecasting of surrounding agents is essential for ensuring the safe operation of autonomous vehicles. Many existing trajectory prediction methods rely heavily on high-definition (HD) maps as strong driving priors. However, the availability and accuracy of these priors are not guaranteed due to substantial costs to build, localization errors of vehicles, or ongoing road constructions. In this paper, we introduce MFTP, a Map-Free Trajectory Prediction method that offers several advantages. First, it eliminates the need for HD maps during inference while still benefiting from map priors during training via knowledge distillation. Second, we present a novel hierarchical encoder that effectively extracts spatial-temporal agent features and aggregates them into multiple trajectory queries. Additionally, we introduce an iterative decoder that sequentially decodes trajectory queries to generate the final predictions. Extensive experiments show that our approach achieves state-of-the-art performance on the Argoverse dataset under the map-free setting.

Yucheng Xing, Xin Wang

Long-horizon wildfire risk forecasting requires generating probabilistic spatial fields under sparse event supervision while maintaining computational efficiency across multiple prediction horizons. Extending diffusion models to multi-step forecasting typically repeats the denoising process independently for each horizon, leading to redundant computation. We introduce N-Tree Diffusion (NT-Diffusion), a hierarchical diffusion model designed for long-horizon wildfire risk forecasting. Fire occurrences are represented as continuous Fire Risk Maps (FRMs), which provide a smoothed spatial risk field suitable for probabilistic modeling. Instead of running separate diffusion trajectories for each predicted timestamp, NT-Diffusion shares early denoising stages and branches at later levels, allowing horizon-specific refinement while reducing redundant sampling. We evaluate the proposed framework on a newly collected real-world wildfire dataset constructed for long-horizon probabilistic prediction. Results indicate that NT-Diffusion achieves consistent accuracy improvements and reduced inference cost compared to baseline forecasting approaches.

Yucheng Xing, Jinxing Yin, Xiaodong Liu

Recently, diffusion models have shown their impressive ability in visual generation tasks. Besides static images, more and more research attentions have been drawn to the generation of realistic videos. The video generation not only has a higher requirement for the quality, but also brings a challenge in ensuring the video continuity. Among all the video generation tasks, human-involved contents, such as human dancing, are even more difficult to generate due to the high degrees of freedom associated with human motions. In this paper, we propose a novel framework, named as DANCER (Dance ANimation via Condition Enhancement and Rendering with Diffusion Model), for realistic single-person dance synthesis based on the most recent stable video diffusion model. As the video generation is generally guided by a reference image and a video sequence, we introduce two important modules into our framework to fully benefit from the two inputs. More specifically, we design an Appearance Enhancement Module (AEM) to focus more on the details of the reference image during the generation, and extend the motion guidance through a Pose Rendering Module (PRM) to capture pose conditions from extra domains. To further improve the generation capability of our model, we also collect a large amount of video data from Internet, and generate a novel datasetTikTok-3K to enhance the model training. The effectiveness of the proposed model has been evaluated through extensive experiments on real-world datasets, where the performance of our model is superior to that of the state-of-the-art methods. All the data and codes will be released upon acceptance.

Yucheng Xing, Ling Huang, Jingying Ma et al.

Pathology whole-slide images (WSIs) are widely used for cancer survival analysis because of their comprehensive histopathological information at both cellular and tissue levels, enabling quantitative, large-scale, and prognostically rich tumor feature analysis. However, most existing methods in WSI survival analysis struggle with limited interpretability and often overlook predictive uncertainty in heterogeneous slide images. In this paper, we propose DPsurv, a dual-prototype whole-slide image evidential fusion network that outputs uncertainty-aware survival intervals, while enabling interpretation of predictions through patch prototype assignment maps, component prototypes, and component-wise relative risk aggregation. Experiments on five publicly available datasets achieve the highest mean concordance index and the lowest mean integrated Brier score, validating the effectiveness and reliability of DPsurv. The interpretation of prediction results provides transparency at the feature, reasoning, and decision levels, thereby enhancing the trustworthiness and interpretability of DPsurv.

Jingying Ma, Feng Wu, Qika Lin et al.

Electroencephalography (EEG) provides real-time insights into brain activity and supports diverse applications in neuroscience. While EEG foundation models (EFMs) have emerged to address the scalability issues of task-specific models, current approaches still yield clinically uninterpretable and weakly discriminative representations, inefficiently capture global dependencies, and neglect important local neural events. We present CodeBrain, a two-stage EFM designed to fill this gap. In the first stage, we introduce the TFDual-Tokenizer, which decouples heterogeneous temporal and frequency EEG signals into discrete tokens, quadratically expanding the representation space to enhance discriminative power and offering domain-specific interpretability by suggesting potential links to neural events and spectral rhythms. In the second stage, we propose the multi-scale EEGSSM architecture, which combines structured global convolution with sliding window attention to efficiently capture both sparse long-range and local dependencies, reflecting the brain's small-world topology. Pretrained on the largest public EEG corpus, CodeBrain achieves strong generalization across 8 downstream tasks and 10 datasets under distribution shifts, supported by comprehensive ablations, scaling-law analyses, and interpretability evaluations. Both code and pretraining weights will be released in the future version.

Yucheng Xing, Xin Wang

Convolutional Neural Network (CNN) has been applied to more and more scenarios due to its excellent performance in many machine learning tasks, especially with deep and complex structures. However, as the network goes deeper, more parameters need to be stored and optimized. Besides, almost all common CNN models adopt "train-and-use" strategy where the structure is pre-defined and the kernel parameters are fixed after the training with the same structure and set of parameters used for all data without considering the content complexity. In this paper, we propose a new CNN framework, named as $\textit{Puppet-CNN}$, which contains two modules: a $\textit{puppet module}$ and a $\textit{puppeteer module}$. The puppet module is a CNN model used to actually process the input data just like other works, but its depth and kernels are generated by the puppeteer module (realized with Ordinary Differential Equation (ODE)) based on the input complexity each time. By recurrently generating kernel parameters in the puppet module, we can take advantage of the dependence among kernels of different convolutional layers to significantly reduce the size of CNN model by only storing and training the parameters of the much smaller puppeteer ODE module. Through experiments on several datasets, our method has proven to be superior than the traditional CNNs on both performance and efficiency. The model size can be reduced more than 10 times.

Yucheng Xing, Xiaodong Liu, Xin Wang

With the development of artificial intelligence, more and more attention has been put onto generative models, which represent the creativity, a very important aspect of intelligence. In recent years, diffusion models have been studied and proven to be more reasonable and effective than previous methods. However, common diffusion frameworks suffer from controllability problems. Although extra conditions have been considered by some work to guide the diffusion process for a specific target generation, it only controls the generation result but not its process. In this work, we propose a new adaptive framework, $\textit{Adaptively Controllable Diffusion (AC-Diff) Model}$, to automatically and fully control the generation process, including not only the type of generation result but also the length and parameters of the generation process. Both inputs and conditions will be first fed into a $\textit{Conditional Time-Step (CTS) Module}$ to determine the number of steps needed for a generation. Then according to the length of the process, the diffusion rate parameters will be estimated through our $\textit{Adaptive Hybrid Noise Schedule (AHNS) Module}$. We further train the network with the corresponding adaptive sampling mechanism to learn how to adjust itself according to the conditions for the overall performance improvement. To enable its practical applications, AC-Diff is expected to largely reduce the average number of generation steps and execution time while maintaining the same performance as done in the literature diffusion models.

Ling Huang, Yucheng Xing, Thierry Denoeux et al.

We introduce an evidential model for time-to-event prediction with censored data. In this model, uncertainty on event time is quantified by Gaussian random fuzzy numbers, a newly introduced family of random fuzzy subsets of the real line with associated belief functions, generalizing both Gaussian random variables and Gaussian possibility distributions. Our approach makes minimal assumptions about the underlying time-to-event distribution. The model is fit by minimizing a generalized negative log-likelihood function that accounts for both normal and censored data. Comparative experiments on two real-world datasets demonstrate the very good performance of our model as compared to the state-of-the-art.

Yingru Liu, Yucheng Xing, Xuewen Yang et al.

Learning continuous-time stochastic dynamics is a fundamental and essential problem in modeling sporadic time series, whose observations are irregular and sparse in both time and dimension. For a given system whose latent states and observed data are high-dimensional, it is generally impossible to derive a precise continuous-time stochastic process to describe the system behaviors. To solve the above problem, we apply Variational Bayesian method and propose a flexible continuous-time stochastic recurrent neural network named Variational Stochastic Differential Networks (VSDN), which embeds the complicated dynamics of the sporadic time series by neural Stochastic Differential Equations (SDE). VSDNs capture the stochastic dependency among latent states and observations by deep neural networks. We also incorporate two differential Evidence Lower Bounds to efficiently train the models. Through comprehensive experiments, we show that VSDNs outperform state-of-the-art continuous-time deep learning models and achieve remarkable performance on prediction and interpolation tasks for sporadic time series.