Zheng Yao

Haodong Chen, Shengyao Zhuang, Zheng Yao et al.

Zero-shot document re-ranking with Large Language Models (LLMs) has evolved from Pointwise methods to Listwise and Setwise approaches that optimize computational efficiency. Despite their success, these methods predominantly rely on generative scoring or output logits, which face bottlenecks in inference latency and result consistency. In-Context Re-ranking (ICR) has recently been proposed as an O(1) alternative method. ICR extracts internal attention signals directly, avoiding the overhead of text generation. However, existing ICR methods simply aggregate signals across all layers; layer-wise contributions and their consistency across architectures have been left unexplored. Furthermore, no unified study has compared internal attention with traditional generative and likelihood-based mechanisms across diverse ranking frameworks under consistent conditions. In this paper, we conduct an orthogonal evaluation of generation, likelihood, and internal attention mechanisms across multiple ranking frameworks. We further identify a universal "bell-curve" distribution of relevance signals across transformer layers, which motivates the proposed Selective-ICR strategy that reduces inference latency by 30%-50% without compromising effectiveness. Finally, evaluation on the reasoning-intensive BRIGHT benchmark shows that precisely capturing high-quality in-context attention signals fundamentally reduces the need for model scaling and reinforcement learning: a zero-shot 8B model matches the performance of 14B reinforcement-learned re-rankers, while even a 0.6B model outperforms state-of-the-art generation-based approaches. These findings redefine the efficiency-effectiveness frontier for LLM-based re-ranking and highlight the latent potential of internal signals for complex reasoning ranking tasks. Our code and results are publicly available at https://github.com/ielab/Selective-ICR.

Zhiqin Zhu, Zheng Yao, Guanqiu Qi et al.

As a necessary process in drug development, finding a drug compound that can selectively bind to a specific protein is highly challenging and costly. Drug-target affinity (DTA), which represents the strength of drug-target interaction (DTI), has played an important role in the DTI prediction task over the past decade. Although deep learning has been applied to DTA-related research, existing solutions ignore fundamental correlations between molecular substructures in molecular representation learning of drug compound molecules/protein targets. Moreover, traditional methods lack the interpretability of the DTA prediction process. This results in missing feature information of intermolecular interactions, thereby affecting prediction performance. Therefore, this paper proposes a DTA prediction method with interactive learning and an autoencoder mechanism. The proposed model enhances the corresponding ability to capture the feature information of a single molecular sequence by the drug/protein molecular representation learning module and supplements the information interaction between molecular sequence pairs by the interactive information learning module. The DTA value prediction module fuses the drug-target pair interaction information to output the predicted value of DTA. Additionally, this paper theoretically proves that the proposed method maximizes evidence lower bound (ELBO) for the joint distribution of the DTA prediction model, which enhances the consistency of the probability distribution between the actual value and the predicted value. The experimental results confirm mutual transformer-drug target affinity (MT-DTA) achieves better performance than other comparative methods.

Zheng Yao, Shuai Wang, Guido Zuccon

Dense retrievers utilize pre-trained backbone language models (e.g., BERT, LLaMA) that are fine-tuned via contrastive learning to perform the task of encoding text into sense representations that can be then compared via a shallow similarity operation, e.g. inner product. Recent research has questioned the role of fine-tuning vs. that of pre-training within dense retrievers, specifically arguing that retrieval knowledge is primarily gained during pre-training, meaning knowledge not acquired during pre-training cannot be sub-sequentially acquired via fine-tuning. We revisit this idea here as the claim was only studied in the context of a BERT-based encoder using DPR as representative dense retriever. We extend the previous analysis by testing other representation approaches (comparing the use of CLS tokens with that of mean pooling), backbone architectures (encoder-only BERT vs. decoder-only LLaMA), and additional datasets (MSMARCO in addition to Natural Questions). Our study confirms that in DPR tuning, pre-trained knowledge underpins retrieval performance, with fine-tuning primarily adjusting neuron activation rather than reorganizing knowledge. However, this pattern does not hold universally, such as in mean-pooled (Contriever) and decoder-based (LLaMA) models. We ensure full reproducibility and make our implementation publicly available at https://github.com/ielab/DenseRetriever-Knowledge-Acquisition.

Yan Liu, Renren Jin, Ling Shi et al.

To thoroughly assess the mathematical reasoning abilities of Large Language Models (LLMs), we need to carefully curate evaluation datasets covering diverse mathematical concepts and mathematical problems at different difficulty levels. In pursuit of this objective, we propose FineMath in this paper, a fine-grained mathematical evaluation benchmark dataset for assessing Chinese LLMs. FineMath is created to cover the major key mathematical concepts taught in elementary school math, which are further divided into 17 categories of math word problems, enabling in-depth analysis of mathematical reasoning abilities of LLMs. All the 17 categories of math word problems are manually annotated with their difficulty levels according to the number of reasoning steps required to solve these problems. We conduct extensive experiments on a wide range of LLMs on FineMath and find that there is still considerable room for improvements in terms of mathematical reasoning capability of Chinese LLMs. We also carry out an in-depth analysis on the evaluation process and methods that have been overlooked previously. These two factors significantly influence the model results and our understanding of their mathematical reasoning capabilities. The dataset will be publicly available soon.