Shujie Li

Shujie Li, Liang Li, Ruiying Geng et al.

Data-to-text (D2T) generation aims to transform structured data into natural language text. Data-to-text pre-training has proved to be powerful in enhancing D2T generation and yields impressive performances. However, previous pre-training methods either oversimplified structured data into a sequence without considering input structures or designed training objectives tailored for a specific data structure (e.g., table or knowledge graph). In this paper, we unify different types of structured data (i.e., table, key-value data, knowledge graph) into the graph format and cast different data-to-text generation tasks as graph-to-text generation. To effectively exploit the structural information of the input graph, we propose a structure-enhanced pre-training method for D2T generation by designing a structure-enhanced Transformer. Concretely, we devise a position matrix for the Transformer, encoding relative positional information of connected nodes in the input graph. In addition, we propose a new attention matrix to incorporate graph structures into the original Transformer by taking the available explicit connectivity structure into account. Extensive experiments on six benchmark datasets show the effectiveness of our model. Our source codes are available at https://github.com/AlibabaResearch/DAMO-ConvAI/tree/main/unid2t.

Yuxia Wu, Shujie Li, Yuan Fang et al.

Large language models (LLMs) have presented significant opportunities to enhance various machine learning applications, including graph neural networks (GNNs). By leveraging the vast open-world knowledge within LLMs, we can more effectively interpret and utilize textual data to better characterize heterophilic graphs, where neighboring nodes often have different labels. However, existing approaches for heterophilic graphs overlook the rich textual data associated with nodes, which could unlock deeper insights into their heterophilic contexts. In this work, we explore the potential of LLMs for modeling heterophilic graphs and propose a novel two-stage framework: LLM-enhanced edge discriminator and LLM-guided edge reweighting. In the first stage, we fine-tune the LLM to better identify homophilic and heterophilic edges based on the textual content of their nodes. In the second stage, we adaptively manage message propagation in GNNs for different edge types based on node features, structures, and heterophilic or homophilic characteristics. To cope with the computational demands when deploying LLMs in practical scenarios, we further explore model distillation techniques to fine-tune smaller, more efficient models that maintain competitive performance. Extensive experiments validate the effectiveness of our framework, demonstrating the feasibility of using LLMs to enhance node classification on heterophilic graphs.

Jingrui Zhang, Yimeng Xu, Shujie Li et al.

Federated Learning (FL) enables collaborative model training across decentralized clients without sharing private data. However, FL suffers from biased global models due to non-IID and long-tail data distributions. We propose \textbf{FedSM}, a novel client-centric framework that mitigates this bias through semantics-guided feature mixup and lightweight classifier retraining. FedSM uses a pretrained image-text-aligned model to compute category-level semantic relevance, guiding the category selection of local features to mix-up with global prototypes to generate class-consistent pseudo-features. These features correct classifier bias, especially when data are heavily skewed. To address the concern of potential domain shift between the pretrained model and the data, we propose probabilistic category selection, enhancing feature diversity to effectively mitigate biases. All computations are performed locally, requiring minimal server overhead. Extensive experiments on long-tail datasets with various imbalanced levels demonstrate that FedSM consistently outperforms state-of-the-art methods in accuracy, with high robustness to domain shift and computational efficiency.

Shujie Li, Yuxia Wu, Chuan Shi et al.

Graph neural networks (GNNs) have demonstrated success in modeling relational data primarily under the assumption of homophily. However, many real-world graphs exhibit heterophily, where linked nodes belong to different categories or possess diverse attributes. Additionally, nodes in many domains are associated with textual descriptions, forming heterophilic text-attributed graphs (TAGs). Despite their significance, the study of heterophilic TAGs remains underexplored due to the lack of comprehensive benchmarks. To address this gap, we introduce the Heterophilic Text-attributed Graph Benchmark (HeTGB), a novel benchmark comprising five real-world heterophilic graph datasets from diverse domains, with nodes enriched by extensive textual descriptions. HeTGB enables systematic evaluation of GNNs, pre-trained language models (PLMs) and co-training methods on the node classification task. Through extensive benchmarking experiments, we showcase the utility of text attributes in heterophilic graphs, analyze the challenges posed by heterophilic TAGs and the limitations of existing models, and provide insights into the interplay between graph structures and textual attributes. We have publicly released HeTGB with baseline implementations to facilitate further research in this field.

Junze Chen, Cheng Yang, Shujie Li et al.

Large language models (LLMs) have demonstrated their strong capabilities in various domains, and have been recently integrated for graph analysis as graph language models (GLMs). With LLMs as the predictor, some GLMs can interpret unseen tasks described by natural language, and learn from a few examples in the prompts without parameter tuning, known as in-context learning (ICL). Another subset of GLMs utilizes abundant training labels to enhance model performance, known as instruction tuning. However, we argue that ICL on graphs has effectiveness issues due to fixed parameters and efficiency issues due to long context. Meanwhile, the large amount of labeled data required for instruction tuning can be difficult to obtain in real-world scenarios. To this end, we aim to introduce an extra parameter adaptation stage that can efficiently tailor GLMs to an unseen graph and task with only a few labeled examples, in exchange for better prediction accuracy and faster inference speed. For implementation, in this paper we propose GraphLAMA method, with its model backbone and learning schemes specialized for efficient tuning and inference. Specifically, for model backbone, we use a graph neural network (GNN) with several well-designed components to transform nodes into the representation space of LLM tokens. Task instructions can then be represented as a mixture of node and language tokens. In the pre-training stage, model parameters except the LLM will be trained with different tasks to capture general knowledge. In the adaptation stage, only a few pre-trained parameters will be updated based on few-shot examples. Extensive experiments on few/zero-shot node classification and summary generation show that our proposed GraphLAMA achieves state-of-the-art performance with 4.91% absolution improvement in accuracy. Compared with ICL, our inference speed can be 10 times faster under 5-shot setting.

Yu Li, Feng Xue, Shujie Li et al.

Lipreading is a challenging cross-modal task that aims to convert visual lip movements into spoken text. Existing lipreading methods often extract visual features that include speaker-specific lip attributes (e.g., shape, color, texture), which introduce spurious correlations between vision and text. These correlations lead to suboptimal lipreading accuracy and restrict model generalization. To address this challenge, we introduce SIFLip, a speaker-invariant visual feature learning framework that disentangles speaker-specific attributes using two complementary disentanglement modules (Implicit Disentanglement and Explicit Disentanglement) to improve generalization. Specifically, since different speakers exhibit semantic consistency between lip movements and phonetic text when pronouncing the same words, our implicit disentanglement module leverages stable text embeddings as supervisory signals to learn common visual representations across speakers, implicitly decoupling speaker-specific features. Additionally, we design a speaker recognition sub-task within the main lipreading pipeline to filter speaker-specific features, then further explicitly disentangle these personalized visual features from the backbone network via gradient reversal. Experimental results demonstrate that SIFLip significantly enhances generalization performance across multiple public datasets. Experimental results demonstrate that SIFLip significantly improves generalization performance across multiple public datasets, outperforming state-of-the-art methods.

Xinlong Zhai, Chunchen Wang, Ruijia Wang et al.

Drug-target interaction prediction (DTI) is essential in various applications including drug discovery and clinical application. There are two perspectives of input data widely used in DTI prediction: Intrinsic data represents how drugs or targets are constructed, and extrinsic data represents how drugs or targets are related to other biological entities. However, any of the two perspectives of input data can be scarce for some drugs or targets, especially for those unpopular or newly discovered. Furthermore, ground-truth labels for specific interaction types can also be scarce. Therefore, we propose the first method to tackle DTI prediction under input data and/or label scarcity. To make our model functional when only one perspective of input data is available, we design two separate experts to process intrinsic and extrinsic data respectively and fuse them adaptively according to different samples. Furthermore, to make the two perspectives complement each other and remedy label scarcity, two experts synergize with each other in a mutually supervised way to exploit the enormous unlabeled data. Extensive experiments on 3 real-world datasets under different extents of input data scarcity and/or label scarcity demonstrate our model outperforms states of the art significantly and steadily, with a maximum improvement of 53.53%. We also test our model without any data scarcity and it still outperforms current methods.