Mohamed Abdalla

Samridhi Vaid, Mike Weldon, Jesse Dunn et al.

Commercial AI scribes cost \$99-600 per physician per month, operate as opaque systems, and do not return data to institutional infrastructure, limiting organizational control over data governance, quality improvement, and clinical workflows. We developed Berta, an open-source modular scribe platform for AI-enabled clinical documentation, and deployed a customized implementation within Alberta Health Services (AHS) integrated with their existing Snowflake AI Data Cloud infrastructure. The system combines automatic speech recognition with large language models while retaining all clinical data within the secure AHS environment. During eight months (November 2024 to July 2025), 198 emergency physicians used the system in 105 urban and rural facilities, generating 22148 clinical sessions and more than 2800 hours of audio. The use grew from 680 to 5530 monthly sessions. Operating costs averaged less than \$30 per physician per month, a 70-95% reduction compared to commercial alternatives. AHS has since approved expansion to 850 physicians. This is the first provincial-scale deployment of an AI scribe integrated with existing health system infrastructure. By releasing Berta as open source, we provide a reproducible, cost-effective alternative that health systems can adapt to their own secure environments, supporting data sovereignty and informed evaluation of AI documentation technology.

Jan Philip Wahle, Terry Ruas, Mohamed Abdalla et al.

Natural Language Processing (NLP) is poised to substantially influence the world. However, significant progress comes hand-in-hand with substantial risks. Addressing them requires broad engagement with various fields of study. Yet, little empirical work examines the state of such engagement (past or current). In this paper, we quantify the degree of influence between 23 fields of study and NLP (on each other). We analyzed ~77k NLP papers, ~3.1m citations from NLP papers to other papers, and ~1.8m citations from other papers to NLP papers. We show that, unlike most fields, the cross-field engagement of NLP, measured by our proposed Citation Field Diversity Index (CFDI), has declined from 0.58 in 1980 to 0.31 in 2022 (an all-time low). In addition, we find that NLP has grown more insular -- citing increasingly more NLP papers and having fewer papers that act as bridges between fields. NLP citations are dominated by computer science; Less than 8% of NLP citations are to linguistics, and less than 3% are to math and psychology. These findings underscore NLP's urgent need to reflect on its engagement with various fields.

Carolina A. M. Heming, Mohamed Abdalla, Shahram Mohanna et al.

Clinical AI model reporting cards should be expanded to incorporate a broad bias reporting of both social and non-social factors. Non-social factors consider the role of other factors, such as disease dependent, anatomic, or instrument factors on AI model bias, which are essential to ensure safe deployment.

Mohammad Tavakoli, Alireza Salemi, Carrie Ye et al.

Evaluating the abilities of large language models (LLMs) for tasks that require long-term memory and thus long-context reasoning, for example in conversational settings, is hampered by the existing benchmarks, which often lack narrative coherence, cover narrow domains, and only test simple recall-oriented tasks. This paper introduces a comprehensive solution to these challenges. First, we present a novel framework for automatically generating long (up to 10M tokens), coherent, and topically diverse conversations, accompanied by probing questions targeting a wide range of memory abilities. From this, we construct BEAM, a new benchmark comprising 100 conversations and 2,000 validated questions. Second, to enhance model performance, we propose LIGHT-a framework inspired by human cognition that equips LLMs with three complementary memory systems: a long-term episodic memory, a short-term working memory, and a scratchpad for accumulating salient facts. Our experiments on BEAM reveal that even LLMs with 1M token context windows (with and without retrieval-augmentation) struggle as dialogues lengthen. In contrast, LIGHT consistently improves performance across various models, achieving an average improvement of 3.5%-12.69% over the strongest baselines, depending on the backbone LLM. An ablation study further confirms the contribution of each memory component.

Mohamed Abdalla, Sahar Abdalla, Alicia Cappello et al.

Workplace norms in computer science have received growing attention due to a series of recent ethical scandals. One type of response has been a push to improve the ethics education provided to computer science students. Evidence for the effectiveness of ethics education remains mixed; some evidence suggests that norms are changing, while gaps between stated values and practice remain. Our focus here is on whether students, who have received some contemporary CS ethics education, are able to effectively apply ethical reasoning to their own decision-making in what is typically the first significant ethical decision of their careers: their job search. Our study examines the ethical decision making of 129 computer science students and recent graduates during their job searches. We find that most students prioritize factors like compensation, location, and workplace culture over ethical and social issues. Even when expressing ethical concerns, respondents often justify taking actions contradicting their moral views through commonly-shared explanations such as desire to make money or the perceived inability to avoid unethical workplaces. This work sheds light on the disconnect between ethics education and real-world CS graduate decision making. We offer insights for evolving curricula to better address practical ethical dilemmas, with implications for educators and industry.

Nedjma Ousidhoum, Shamsuddeen Hassan Muhammad, Mohamed Abdalla et al.

Exploring and quantifying semantic relatedness is central to representing language and holds significant implications across various NLP tasks. While earlier NLP research primarily focused on semantic similarity, often within the English language context, we instead investigate the broader phenomenon of semantic relatedness. In this paper, we present \textit{SemRel}, a new semantic relatedness dataset collection annotated by native speakers across 13 languages: \textit{Afrikaans, Algerian Arabic, Amharic, English, Hausa, Hindi, Indonesian, Kinyarwanda, Marathi, Moroccan Arabic, Modern Standard Arabic, Spanish,} and \textit{Telugu}. These languages originate from five distinct language families and are predominantly spoken in Africa and Asia -- regions characterised by a relatively limited availability of NLP resources. Each instance in the SemRel datasets is a sentence pair associated with a score that represents the degree of semantic textual relatedness between the two sentences. The scores are obtained using a comparative annotation framework. We describe the data collection and annotation processes, challenges when building the datasets, baseline experiments, and their impact and utility in NLP.

Nedjma Ousidhoum, Shamsuddeen Hassan Muhammad, Mohamed Abdalla et al.

We present the first shared task on Semantic Textual Relatedness (STR). While earlier shared tasks primarily focused on semantic similarity, we instead investigate the broader phenomenon of semantic relatedness across 14 languages: Afrikaans, Algerian Arabic, Amharic, English, Hausa, Hindi, Indonesian, Kinyarwanda, Marathi, Moroccan Arabic, Modern Standard Arabic, Punjabi, Spanish, and Telugu. These languages originate from five distinct language families and are predominantly spoken in Africa and Asia -- regions characterised by the relatively limited availability of NLP resources. Each instance in the datasets is a sentence pair associated with a score that represents the degree of semantic textual relatedness between the two sentences. Participating systems were asked to rank sentence pairs by their closeness in meaning (i.e., their degree of semantic relatedness) in the 14 languages in three main tracks: (a) supervised, (b) unsupervised, and (c) crosslingual. The task attracted 163 participants. We received 70 submissions in total (across all tasks) from 51 different teams, and 38 system description papers. We report on the best-performing systems as well as the most common and the most effective approaches for the three different tracks.

Will Aitken, Mohamed Abdalla, Karen Rudie et al.

Impressive performance of pre-trained models has garnered public attention and made news headlines in recent years. Almost always, these models are produced by or in collaboration with industry. Using them is critical for competing on natural language processing (NLP) benchmarks and correspondingly to stay relevant in NLP research. We surveyed 100 papers published at EMNLP 2022 to determine the degree to which researchers rely on industry models, other artifacts, and contributions to publish in prestigious NLP venues and found that the ratio of their citation is at least three times greater than what would be expected. Our work serves as a scaffold to enable future researchers to more accurately address whether: 1) Collaboration with industry is still collaboration in the absence of an alternative or 2) if NLP inquiry has been captured by the motivations and research direction of private corporations.

Jan Philip Wahle, Terry Ruas, Mohamed Abdalla et al.

This study examines the tendency to cite older work across 20 fields of study over 43 years (1980--2023). We put NLP's propensity to cite older work in the context of these 20 other fields to analyze whether NLP shows similar temporal citation patterns to these other fields over time or whether differences can be observed. Our analysis, based on a dataset of approximately 240 million papers, reveals a broader scientific trend: many fields have markedly declined in citing older works (e.g., psychology, computer science). We term this decline a 'citation age recession', analogous to how economists define periods of reduced economic activity. The trend is strongest in NLP and ML research (-12.8% and -5.5% in citation age from previous peaks). Our results suggest that citing more recent works is not directly driven by the growth in publication rates (-3.4% across fields; -5.2% in humanities; -5.5% in formal sciences) -- even when controlling for an increase in the volume of papers. Our findings raise questions about the scientific community's engagement with past literature, particularly for NLP, and the potential consequences of neglecting older but relevant research. The data and a demo showcasing our results are publicly available.

Kiana Aghakasiri, Noopur Zambare, JoAnn Thai et al.

De-identification in the healthcare setting is an application of NLP where automated algorithms are used to remove personally identifying information of patients (and, sometimes, providers). With the recent rise of generative large language models (LLMs), there has been a corresponding rise in the number of papers that apply LLMs to de-identification. Although these approaches often report near-perfect results, significant challenges concerning reproducibility and utility of the research papers persist. This paper identifies three key limitations in the current literature: inconsistent reporting metrics hindering direct comparisons, the inadequacy of traditional classification metrics in capturing errors which LLMs may be more prone to (i.e., altering clinically relevant information), and lack of manual validation of automated metrics which aim to quantify these errors. To address these issues, we first present a survey of LLM-based de-identification research, highlighting the heterogeneity in reporting standards. Second, we evaluated a diverse set of models to quantify the extent of inappropriate removal of clinical information. Next, we conduct a manual validation of an existing evaluation metric to measure the removal of clinical information, employing clinical experts to assess their efficacy. We highlight poor performance and describe the inherent limitations of such metrics in identifying clinically significant changes. Lastly, we propose a novel methodology for the detection of clinically relevant information removal.

Mohamed Abdalla, Jan Philip Wahle, Terry Ruas et al.

Recent advances in deep learning methods for natural language processing (NLP) have created new business opportunities and made NLP research critical for industry development. As one of the big players in the field of NLP, together with governments and universities, it is important to track the influence of industry on research. In this study, we seek to quantify and characterize industry presence in the NLP community over time. Using a corpus with comprehensive metadata of 78,187 NLP publications and 701 resumes of NLP publication authors, we explore the industry presence in the field since the early 90s. We find that industry presence among NLP authors has been steady before a steep increase over the past five years (180% growth from 2017 to 2022). A few companies account for most of the publications and provide funding to academic researchers through grants and internships. Our study shows that the presence and impact of the industry on natural language processing research are significant and fast-growing. This work calls for increased transparency of industry influence in the field.

Mohamed Abdalla, Krishnapriya Vishnubhotla, Saif M. Mohammad

The degree of semantic relatedness of two units of language has long been considered fundamental to understanding meaning. Additionally, automatically determining relatedness has many applications such as question answering and summarization. However, prior NLP work has largely focused on semantic similarity, a subset of relatedness, because of a lack of relatedness datasets. In this paper, we introduce a dataset for Semantic Textual Relatedness, STR-2022, that has 5,500 English sentence pairs manually annotated using a comparative annotation framework, resulting in fine-grained scores. We show that human intuition regarding relatedness of sentence pairs is highly reliable, with a repeat annotation correlation of 0.84. We use the dataset to explore questions on what makes sentences semantically related. We also show the utility of STR-2022 for evaluating automatic methods of sentence representation and for various downstream NLP tasks. Our dataset, data statement, and annotation questionnaire can be found at: https://doi.org/10.5281/zenodo.7599667

Zining Zhu, Chuer Pan, Mohamed Abdalla et al.

Recently, neural language models (LMs) have demonstrated impressive abilities in generating high-quality discourse. While many recent papers have analyzed the syntactic aspects encoded in LMs, there has been no analysis to date of the inter-sentential, rhetorical knowledge. In this paper, we propose a method that quantitatively evaluates the rhetorical capacities of neural LMs. We examine the capacities of neural LMs understanding the rhetoric of discourse by evaluating their abilities to encode a set of linguistic features derived from Rhetorical Structure Theory (RST). Our experiments show that BERT-based LMs outperform other Transformer LMs, revealing the richer discourse knowledge in their intermediate layer representations. In addition, GPT-2 and XLNet apparently encode less rhetorical knowledge, and we suggest an explanation drawing from linguistic philosophy. Our method shows an avenue towards quantifying the rhetorical capacities of neural LMs.

Haoran Zhang, Amy X. Lu, Mohamed Abdalla et al.

In this work, we examine the extent to which embeddings may encode marginalized populations differently, and how this may lead to a perpetuation of biases and worsened performance on clinical tasks. We pretrain deep embedding models (BERT) on medical notes from the MIMIC-III hospital dataset, and quantify potential disparities using two approaches. First, we identify dangerous latent relationships that are captured by the contextual word embeddings using a fill-in-the-blank method with text from real clinical notes and a log probability bias score quantification. Second, we evaluate performance gaps across different definitions of fairness on over 50 downstream clinical prediction tasks that include detection of acute and chronic conditions. We find that classifiers trained from BERT representations exhibit statistically significant differences in performance, often favoring the majority group with regards to gender, language, ethnicity, and insurance status. Finally, we explore shortcomings of using adversarial debiasing to obfuscate subgroup information in contextual word embeddings, and recommend best practices for such deep embedding models in clinical settings.

Mohamed Abdalla, Graeme Hirst

Current approaches to cross-lingual sentiment analysis try to leverage the wealth of labeled English data using bilingual lexicons, bilingual vector space embeddings, or machine translation systems. Here we show that it is possible to use a single linear transformation, with as few as 2000 word pairs, to capture fine-grained sentiment relationships between words in a cross-lingual setting. We apply these cross-lingual sentiment models to a diverse set of tasks to demonstrate their functionality in a non-English context. By effectively leveraging English sentiment knowledge without the need for accurate translation, we can analyze and extract features from other languages with scarce data at a very low cost, thus making sentiment and related analyses for many languages inexpensive.