APNov 29, 2016
From dynamics to links: a sparse reconstruction of the topology of a neural networkGiacomo Aletti, Davide Lonardoni, Giovanni Naldi et al.
One major challenge in neuroscience is the identification of interrelations between signals reflecting neural activity and how information processing occurs in the neural circuits. At the cellular and molecular level, mechanisms of signal transduction have been studied intensively and a better knowledge and understanding of some basic processes of information handling by neurons has been achieved. In contrast, little is known about the organization and function of complex neuronal networks. Experimental methods are now available to simultaneously monitor electrical activity of a large number of neurons in real time. Then, the qualitative and quantitative analysis of the spiking activity of individual neurons is a very valuable tool for the study of the dynamics and architecture of the neural networks. Such activity is not due to the sole intrinsic properties of the individual neural cells but it is mostly consequence of the direct influence of other neurons. The deduction of the effective connectivity between neurons, whose experimental spike trains are observed, is of crucial importance in neuroscience: first for the correct interpretation of the electro-physiological activity of the involved neurons and neural networks, and, for correctly relating the electrophysiological activity to the functional tasks accomplished by the network. In this work we propose a novel method for the identification of connectivity of neural networks using recorded voltages. Our approach is based on the assumption that the network has a topology with sparse connections. After a brief description of our method we will report the performances and compare it to the cross-correlation computed on the spike trains, that represents a gold standard method in the field.
APJul 20, 2017
A new nonlocal nonlinear diffusion equation for image denoising and data analysisGiacomo Aletti, Monica Moroni, Giovanni Naldi
In this paper we introduce and study a new feature-preserving nonlinear anisotropic diffusion for denoising signals. The proposed partial differential equation is based on a novel diffusivity coefficient that uses a nonlocal automatically detected parameter related to the local bounded variation and the local oscillating pattern of the noisy input signal. We provide a mathematical analysis of the existence of the solution of our nonlinear and nonlocal diffusion equation in the two dimensional case (images processing). Finally, we propose a numerical scheme with some numerical experiments which demonstrate the effectiveness of the new method.
NADec 9, 2006
A comparison between relaxation and Kurganov-Tadmor schemesFausto Cavalli, Giovanni Naldi, Gabriella Puppo et al.
In this work we compare two semidiscrete schemes for the solution of hyperbolic conservation laws, namely the relaxation and the Kurganov Tadmor central scheme. We are particularly interested in their behavior under small time steps, in view of future applications to convection diffusion problems. The schemes are tested on two benchmark problems, with one space variable.
NADec 9, 2006
Increasing efficiency through optimal RK time integration of diffusion equationsFausto Cavalli, Giovanni Naldi, Gabriella Puppo et al.
The application of Runge-Kutta schemes designed to enjoy a large region of absolute stability can significantly increase the efficiency of numerical methods for PDEs based on a method of lines approach. In this work we investigate the improvement in the efficiency of the time integration of relaxation schemes for degenerate diffusion problems, using SSP Runge-Kutta schemes and computing the maximal CFL coefficients. This technique can be extended to other PDEs, linear and nonlinear, provided the space operator has eigenvalues with a non-zero real part.
NAOct 12, 2006
High order relaxation schemes for non linear degenerate diffusion problemsFausto Cavalli, Giovanni Naldi, Gabriella Puppo et al.
Several relaxation approximations to partial differential equations have been recently proposed. Examples include conservation laws, Hamilton-Jacobi equations, convection-diffusion problems, gas dynamics problems. The present paper focuses onto diffusive relaxation schemes for the numerical approximation of nonlinear parabolic equations. These schemes are based on suitable semilinear hyperbolic system with relaxation terms. High order methods are obtained by coupling ENO and WENO schemes for space discretization with IMEX schemes for time integration. Error estimates and convergence analysis are developed for semidiscrete schemes with numerical analysis for fully discrete relaxed schemes. Various numerical results in one and two dimension illustrate the high accuracy and good properties of the proposed numerical schemes. These schemes can be easily implemented for parallel computer and applied to more general system of nonlinear parabolic equations in two- and three-dimensional cases.